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[175617_at]

Description g1354208 /REP_DB=GenBank Identifier /GB=U49794.1 /PROTEIN_GB=AAB03858.1 /CHR=4 /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 60      4grp_high_8_8 > 26      6grp_highest_nonorm > 85      6grp_total > 39      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 08      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 495
1 2 3 4 range
A 728
(3)
P 		503.1
(-1)
P 		389.9
(-3)
P 		602.7
(0.8)
P 		338
B 816.1
(3)
P 		447.1
(-1.5)
P 		320.7
(-3)
P 		516.7
(-0.6)
P 		495
C 744.8
(3)
P 		538.1
(-0.8)
P 		422.1
(-3)
P 		581.2
(-0)
P 		323
avr 763
(3) 		496.1
(-1.2) 		377.6
(-3) 		566.9
(-0.1) 		385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 721
1 2 3 4 5 6 range
A 1078.6
(3)
P 		615.4
(-2.2)
P 		561.6
(-2.8)
P 		539.5
(-3)
P 		907.9
(1.1)
P 		885.3
(0.8)
P 		539
B 840.7
(2.3)
P 		653.5
(0.3)
P 		358.1
(-3)
P 		795.6
(1.8)
P 		792.8
(1.8)
P 		901.3
(3)
P 		543
C 897.8
(3)
P 		685.2
(-0.6)
P 		539.3
(-3)
P 		630.9
(-1.5)
P 		811.6
(1.6)
P 		755.6
(0.6)
P 		359
avr 939
(3) 		651.4
(-0.8) 		486.3
(-3) 		655.3
(-0.8) 		837.4
(1.7) 		847.4
(1.8) 		453
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 265.1
(3)
P 		109.2
(-2.3)
P 		101.9
(-2.5)
P 		88.2
(-3)
P 		177
B 260.2
(3)
P 		110.4
(-1.8)
P 		74.3
(-3)
P 		110.1
(-1.8)
P 		186
C 246.5
(3)
P 		154.7
(-0.7)
P 		147.1
(-1)
P 		98
(-3)
P 		149
avr 257.3
(3) 		124.8
(-2) 		107.8
(-2.7) 		98.8
(-3) 		159

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 249
1 2 3 4 5 6 range
A 198.8
(0)
P 		218.9
(0.8)
P 		122.3
(-3)
P 		136.8
(-2.4)
P 		274
(3)
P 		215.5
(0.7)
P 		152
B 292.5
(1.9)
P 		217.5
(0.1)
P 		87
(-3)
P 		210.7
(-0)
P 		322.1
(2.7)
P 		336.1
(3)
P 		249
C 332.8
(3)
P 		209.1
(-0.6)
P 		137.3
(-2.7)
P 		126.9
(-3)
P 		262.6
(1)
P 		252.9
(0.7)
P 		206
avr 274.7
(2.6) 		215.2
(0.5) 		115.5
(-3) 		158.1
(-1.5) 		286.2
(3) 		268.2
(2.4) 		171
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175617_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19894
Sequence Type Exemplar sequence
Representative Public ID 1354208 NCBI
Target Description g1354208 /REP_DB=GenBank Identifier /GB=U49794.1 /PROTEIN_GB=AAB03858.1 /CHR=4 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171350 NCBI Caenorhabditis elegans Lin-12 And Glp-1 phenotype family member (lag-1) (lag-1) mRNA, complete cds. 11/11 A 
K08B4.1a ENSEMBL cdna:known chromosome:CEL140:IV:6095395:6110623:1 gene:K08B4.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000036226 5/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
177373 2 1 NM_171350 175617_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:6095400-6110629(+) 100.0 100.0
Public Domain and Genome References
Ensembl K08B4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC68978 Lin-12 and glp-1 phenotype protein 1, isoform a [Caenorhabditis elegans] ref|NP_741410.1| Lin-12 And Glp-1 phenotype family member (lag-1) [Caenorhabditis elegans] gb|AAB03859.1| DNA-binding protein LAG-1 gb|AAB03858.1| lag-1 gene product 0.0
blast AAM98006 Lin-12 and glp-1 phenotype protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023278.1| Lin-12 And Glp-1 phenotype family member (lag-1) [Caenorhabditis elegans] 0.0
blast 1TTU Chain , Crystal Structure Of Csl Bound To Dna 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002909 EMBL-EBI Cell surface receptor IPT/TIG 1.9E-11
Sequence
Target Sequence 
>C. ELEGANS:175617_AT
gtccaattactagattccactctcgcgggattactgtatctttatattgtctcctaattt
ctcccaattcgtttaaatttccaccccgggtcctgaagccttcatttctacatttttttc
tcgcttccatatgtaataatcacttttaacttacttcattttcttgttgcaatacttttt
gtttattttcttttttccttcttcgggtggcttttccatcattttgttcttggatttatt
atttgcaatactttgccgtttctctgtgtctcccccttctacattcatctctcagcactc
tctaattacagtatttttgagaaaatcctgttgaaaatgtttcggattgaattatactgg
atttttctctgttctaattataatcaacgcgccctcatattaattaagtatatagataca
tagatataattaacattcacacggtggtatctccct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCAATTACTAGATTCCACTCTCG 622 477 2026 Antisense
TCCACTCTCGCGGGATTACTGTATC 207 589 2041 Antisense
TATATTGTCTCCTAATTTCTCCCAA 82 663 2068 Antisense
CCTGAAGCCTTCATTTCTACATTTT 338 267 2117 Antisense
TTTTTTTCTCGCTTCCATATGTAAT 636 675 2138 Antisense
GGCTTTTCCATCATTTTGTTCTTGG 464 537 2234 Antisense
TTGCAATACTTTGCCGTTTCTCTGT 587 703 2268 Antisense
ATCTCTCAGCACTCTCTAATTACAG 647 31 2312 Antisense
TATACTGGATTTTTCTCTGTTCTAA 193 659 2378 Antisense
AATCAACGCGCCCTCATATTAATTA 315 171 2407 Antisense
AACATTCACACGGTGGTATCTCCCT 662 137 2457 Antisense
Sequence Source GenBank