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[175616_at]

Description g1666537 /REP_DB=GenBank Identifier /GB=U25032.1 /PROTEIN_GB=AAB18670.1 /CHR=3 /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 97      6grp_total > 69      4grp_total > 31      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 420
1 2 3 4 range
A 676.8
(3)
P 		351.6
(-1.7)
P 		427
(-0.6)
P 		257.3
(-3)
P 		420
B 479.2
(0.8)
P 		291.9
(-3)
P 		370.6
(-1.4)
P 		587.5
(3)
P 		296
C 565.6
(3)
P 		300.9
(-3)
P 		394.4
(-0.9)
P 		468.2
(0.8)
P 		265
avr 573.9
(3) 		314.8
(-3) 		397.3
(-1.1) 		437.7
(-0.2) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1095
1 2 3 4 5 6 range
A 988.2
(-1.3)
P 		867.7
(-2.1)
P 		742.3
(-3)
P 		762.4
(-2.9)
P 		1067.8
(-0.8)
P 		1625.5
(3)
P 		883
B 951.5
(-0.3)
P 		838.9
(-1)
P 		530.1
(-3)
P 		794.6
(-1.3)
P 		818.4
(-1.2)
P 		1479.1
(3)
P 		949
C 866.5
(-1.8)
P 		931.1
(-0)
P 		979
(1.3)
P 		821
(-3)
P 		1043.3
(3)
P 		1038.7
(2.9)
P 		222
avr 935.4
(-1.2) 		879.2
(-1.8) 		750.5
(-3) 		792.7
(-2.6) 		976.5
(-0.8) 		1381.1
(3) 		631
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 209
1 2 3 4 range
A 246.4
(3)
P 		76.3
(-1.9)
P 		111.6
(-0.9)
P 		37.7
(-3)
P 		209
B 152.8
(3)
P 		72.1
(-3)
P 		85.9
(-2)
P 		125.2
(0.9)
P 		81
C 187.2
(3)
P 		86.5
(-2.6)
P 		137.5
(0.2)
P 		78.9
(-3)
P 		108
avr 195.5
(3) 		78.3
(-3) 		111.7
(-1.3) 		80.6
(-2.9) 		117

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 423
1 2 3 4 5 6 range
A 182.2
(-2.5)
P 		308.6
(0.8)
P 		161.7
(-3)
P 		193.4
(-2.2)
P 		322.2
(1.1)
P 		395.8
(3)
P 		234
B 331.1
(-0.1)
P 		279.2
(-0.9)
P 		128.7
(-3)
P 		210.5
(-1.8)
P 		332.5
(-0.1)
P 		551.5
(3)
P 		423
C 321.2
(2.1)
P 		284.1
(0.9)
P 		249.2
(-0.2)
P 		165.1
(-3)
P 		337.6
(2.7)
P 		347.7
(3)
P 		183
avr 278.2
(-0.7) 		290.6
(-0.4) 		179.9
(-3) 		189.7
(-2.8) 		330.8
(0.6) 		431.7
(3) 		252
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175616_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19810
Sequence Type Exemplar sequence
Representative Public ID 1666537 NCBI
Target Description g1666537 /REP_DB=GenBank Identifier /GB=U25032.1 /PROTEIN_GB=AAB18670.1 /CHR=3 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027436(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027436 NCBI Caenorhabditis elegans abnormal embryonic PARtitioning of cytoplasm family member (par-3) (par-3) mRNA, complete cds. 11/11 None
F54E7.3b ENSEMBL cdna:known chromosome:CEL140:III:5664184:5676681:1 gene:F54E7.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175783 2 1 NM_001027436 175616_at (11), 188931_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5664182-5676678(+) 99.57 100.0
Public Domain and Genome References
Ensembl F54E7.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73875 Abnormal embryonic partitioning of cytoplasm protein 3, isoform b [Caenorhabditis elegans] ref|NP_001022607.1| abnormal embryonic PARtitioning of cytoplasm family member (par-3) [Caenorhabditis elegans] sp|Q17353|PARD3_CAEEL Partition defective-3 protein (Par-3 protein) (Abnormal embryonic partitioning of cytoplasm protein 3) gb|AAB18670.1| par-3 gene product 0.0
blast AAK73874 Abnormal embryonic partitioning of cytoplasm protein 3, isoform a [Caenorhabditis elegans] ref|NP_498217.2| abnormal embryonic PARtitioning of cytoplasm family member (par-3) [Caenorhabditis elegans] 0.0
blast T34302 cell polarity protein par-3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.5E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.2E-7
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 4.8E-11
Sequence
Target Sequence 
>C. ELEGANS:175616_AT
taattcctctataattctccttttcacttctccctcgatatctataactcacttctaaaa
agccggttcttcttattctaaacattttagtagggaattatctctatttctctctcctgt
tgaattcatagccgtcgtccatctctgtgatgttttctatattgtttgtatttagtagcc
tcccgaatcaaatcaaatccatttttattctgtttaacatacttcttgttttataacgaa
tgttgttgtgagcttttaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATTCCTCTATAATTCTCCTTTTC 117 635 4550 Antisense
TTCTCCCTCGATATCTATAACTCAC 152 693 4577 Antisense
TCACTTCTAAAAAGCCGGTTCTTCT 263 625 4598 Antisense
AGCCGGTTCTTCTTATTCTAAACAT 627 83 4610 Antisense
CTATTTCTCTCTCCTGTTGAATTCA 515 223 4653 Antisense
CTGTTGAATTCATAGCCGTCGTCCA 312 239 4666 Antisense
CTCTGTGATGTTTTCTATATTGTTT 116 233 4692 Antisense
TTGTTTGTATTTAGTAGCCTCCCGA 321 705 4711 Antisense
GTAGCCTCCCGAATCAAATCAAATC 316 457 4724 Antisense
TCAAATCCATTTTTATTCTGTTTAA 233 629 4742 Antisense
ACGAATGTTGTTGTGAGCTTTTAGA 494 91 4785 Antisense
Sequence Source GenBank