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[175615_s_at]

Description g2343264 /REP_DB=GenBank Identifier /GB=AF013951.1 /PROTEIN_GB=AAC47748.1 /CHR=3 /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 68      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 91      6grp_total > 57      4grp_total > 23      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 162
1 2 3 4 range
A 225.3
(3)
P 		140.3
(-2.2)
P 		144.7
(-1.9)
P 		126.5
(-3)
P 		99
B 180.5
(0.8)
P 		116.8
(-1.5)
P 		76.5
(-3)
P 		238.9
(3)
P 		162
C 170.6
(3)
P 		133.6
(-3)
P 		153.9
(0.3)
P 		136.3
(-2.6)
P 		37
avr 192.1
(3) 		130.2
(-2.5) 		125
(-3) 		167.2
(0.8) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 314
1 2 3 4 5 6 range
A 239.7
(3)
P 		164.7
(-1.7)
P 		155.6
(-2.2)
P 		143.5
(-3)
P 		161.3
(-1.9)
P 		235.9
(2.8)
P 		96
B 255.4
(-1.3)
P 		266.7
(-1.1)
P 		198.3
(-2.6)
P 		184.4
(-2.9)
P 		178.3
(-3)
P 		457.2
(3)
P 		279
C 183.8
(-2)
P 		252.7
(0.2)
P 		159
(-2.7)
P 		151.1
(-3)
P 		191.8
(-1.7)
P 		338.9
(3)
P 		188
avr 226.3
(-0.8) 		228
(-0.8) 		171
(-2.6) 		159.7
(-3) 		177.1
(-2.4) 		344
(3) 		184
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 82
(3)
P 		30.4
(-1.9)
P 		37.8
(-1.2)
P 		18.5
(-3)
P 		64
B 57.6
(3)
P 		28.8
(-1.3)
P 		17.7
(-3)
P 		50.9
(2)
P 		40
C 56.5
(3)
P 		38.4
(-0.2)
P 		53.6
(2.5)
P 		23
(-3)
P 		34
avr 65.4
(3) 		32.5
(-2.7) 		36.4
(-2) 		30.8
(-3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 44.2
(-0.5)
P 		58.6
(3)
P 		33.9
(-3)
P 		36.4
(-2.4)
P 		48.7
(0.6)
P 		57.4
(2.7)
P 		25
B 88.8
(-1)
P 		88.8
(-1)
P 		48.1
(-3)
P 		48.8
(-3)
P 		72.5
(-1.8)
P 		170.5
(3)
P 		122
C 68.1
(-0.3)
P 		77.1
(0.4)
P 		40.5
(-2.3)
P 		30.4
(-3)
P 		62.1
(-0.7)
P 		113.5
(3)
P 		83
avr 67
(-0.7) 		74.8
(-0.1) 		40.8
(-2.8) 		38.5
(-3) 		61.1
(-1.2) 		113.8
(3) 		75
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175615_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19803
Sequence Type Exemplar sequence
Representative Public ID 2343264 NCBI
Target Description g2343264 /REP_DB=GenBank Identifier /GB=AF013951.1 /PROTEIN_GB=AAC47748.1 /CHR=3 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065835(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065835 NCBI Caenorhabditis elegans Worm aRMadillo family member (wrm-1) (wrm-1) mRNA, complete cds. 11/11 A 
B0336.1.1 ENSEMBL cdna:known chromosome:CEL140:III:5722793:5727050:1 gene:B0336.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
B0336.1.2 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5722829-5726830(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol wrm-1
Ensembl B0336.1
Entrez Gene 175802 Entrez gene
SwissProt Q10953 EMBL-EBI
WormBase CE26743 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
45944 positive regulation of transcription from RNA polymerase II promoter inferred from direct assay QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3713 transcription coactivator activity inferred from direct assay QuickGO AmiGO
8134 transcription factor binding inferred from physical interaction QuickGO AmiGO
5515 protein binding inferred from physical interaction QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK18863 Worm armadillo protein 1 [Caenorhabditis elegans] ref|NP_498236.1| Worm aRMadillo family member (wrm-1) [Caenorhabditis elegans] gb|AAC47748.1| wrm-1 gene product [Caenorhabditis elegans] 0.0
blast T15342 hypothetical protein B0336.1 - Caenorhabditis elegans 0.0
blast CAE64327 Hypothetical protein CBG09006 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175615_S_AT
actatgttgtcaaagatcatcgatcttggtagacatcagcagagaatagtttcacaacaa
catcaacagcatcaaatgcagcatcatcgacaactaatgtgaatgaatctttgtgcgggt
acagaattccctactcccggtgcacagacacacaatctcaatcaaatcgatcttccagtt
ttattcatgtgct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTATGTTGTCAAAGATCATCGATC 63 103 2302 Antisense
GATCATCGATCTTGGTAGACATCAG 653 419 2316 Antisense
AGACATCAGCAGAGAATAGTTTCAC 523 71 2332 Antisense
AGAATAGTTTCACAACAACATCAAC 364 73 2344 Antisense
TCAACAGCATCAAATGCAGCATCAT 600 629 2364 Antisense
GCAGCATCATCGACAACTAATGTGA 355 313 2379 Antisense
GTGAATGAATCTTTGTGCGGGTACA 535 481 2400 Antisense
TGTGCGGGTACAGAATTCCCTACTC 685 553 2413 Antisense
GTGCACAGACACACAATCTCAATCA 240 481 2441 Antisense
TCAATCAAATCGATCTTCCAGTTTT 46 633 2459 Antisense
GATCTTCCAGTTTTATTCATGTGCT 10 421 2470 Antisense
Sequence Source GenBank