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[175613_at]

Description g861208 /REP_DB=GenBank Identifier /GB=U27124.1 /PROTEIN_GB=AAA73482.1 /CHR=3 /FEA=Mapped Transcript /DEF=MPK-1
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 27      4grp_highest_8_8 > 59      4grp_high_8_8 > 25      6grp_highest_nonorm > 30      6grp_total > 27      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 954
1 2 3 4 range
A 1608.1
(3)
P 		939
(-2.2)
P 		828.8
(-3)
P 		1030.3
(-1.4)
P 		779
B 1624.5
(3)
P 		809.7
(-2.8)
P 		786.5
(-3)
P 		1036.8
(-1.2)
P 		838
C 1678.2
(3)
P 		944.6
(-1.6)
P 		724.5
(-3)
P 		809
(-2.5)
P 		954
avr 1636.9
(3) 		897.8
(-2.2) 		779.9
(-3) 		958.7
(-1.7) 		857

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 967
1 2 3 4 5 6 range
A 1143.4
(3)
P 		1146.6
(3)
P 		607
(-2.9)
P 		654.1
(-2.4)
P 		599.3
(-3)
P 		845.2
(-0.3)
P 		547
B 1287.6
(3)
P 		870.7
(-0.2)
P 		498.1
(-3)
P 		565.4
(-2.5)
P 		615
(-2.1)
P 		743.1
(-1.1)
P 		790
C 1465
(3)
P 		712.3
(-2.1)
P 		764.1
(-1.7)
P 		571.1
(-3)
P 		622
(-2.7)
P 		732
(-1.9)
P 		894
avr 1298.7
(3) 		909.9
(-0.3) 		623.1
(-2.8) 		596.9
(-3) 		612.1
(-2.9) 		773.4
(-1.5) 		702
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 449
1 2 3 4 range
A 585.5
(3)
P 		203.8
(-2.3)
P 		216.7
(-2.1)
P 		150.8
(-3)
P 		435
B 518
(3)
P 		200
(-2.7)
P 		182.2
(-3)
P 		220.9
(-2.3)
P 		336
C 555.5
(3)
P 		271.6
(-1.1)
P 		252.5
(-1.3)
P 		136.4
(-3)
P 		419
avr 553
(3) 		225.1
(-2.1) 		217.1
(-2.3) 		169.4
(-3) 		384

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 428
1 2 3 4 5 6 range
A 210.8
(-1.3)
P 		407.8
(3)
P 		132.2
(-3)
P 		165.9
(-2.3)
P 		180.8
(-1.9)
P 		205.8
(-1.4)
P 		276
B 448
(3)
P 		289.8
(0.1)
P 		121
(-3)
P 		149.7
(-2.5)
P 		249.9
(-0.6)
P 		277.1
(-0.1)
P 		327
C 543
(3)
P 		217.4
(-1.6)
P 		194.5
(-1.9)
P 		114.9
(-3)
P 		201.3
(-1.8)
P 		245.1
(-1.2)
P 		428
avr 400.6
(3) 		305
(0.8) 		149.2
(-2.9) 		143.5
(-3) 		210.7
(-1.4) 		242.7
(-0.7) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175613_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19756
Sequence Type Exemplar sequence
Representative Public ID 861208 NCBI
Target Description g861208 /REP_DB=GenBank Identifier /GB=U27124.1 /PROTEIN_GB=AAA73482.1 /CHR=3 /FEA=Mapped Transcript /DEF=MPK-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027413(11), NM_001027412(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027413 NCBI Caenorhabditis elegans MAP Kinase family member (mpk-1) (mpk-1) mRNA, complete cds. 11/11 None
NM_001027412 NCBI Caenorhabditis elegans MAP Kinase family member (mpk-1) (mpk-1) mRNA, complete cds. 11/11 None
F43C1.2a.1 ENSEMBL cdna:known chromosome:CEL140:III:4216734:4219613:-1 gene:F43C1.2 11/11 A 
F43C1.2a.2 ENSEMBL cdna:known chromosome:CEL140:III:4216734:4228044:-1 gene:F43C1.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4216733-4219613(-) 100.0 100.0
Public Domain and Genome References
Ensembl F43C1.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB60996 Hypothetical protein F43C1.2b [Caenorhabditis elegans] ref|NP_001022584.1| MAP Kinase family member (mpk-1) [Caenorhabditis elegans] sp|P39745|SUR1_CAEEL Mitogen-activated protein kinase mpk-1 (MAP kinase sur-1) 0.0
blast AAA18956 Sur-1 MAP kinase 0.0
blast CAA87057 Hypothetical protein F43C1.2a [Caenorhabditis elegans] ref|NP_001022583.1| MAP Kinase family member (mpk-1) [Caenorhabditis elegans] gb|AAA73482.1| MPK-1 0.0
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 6.0E-68
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-68
hanks 3.1.1 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; CDC2Hs 1.0E-70
hanks 3.1.1 CMCG Group; CMGC I Cyclin-dependent (CDKs) and close relatives; CDC2Hs 3.0E-72
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-84
Pfam IPR000719 EMBL-EBI Protein kinase 1.3E-84
Sequence
Target Sequence 
>C. ELEGANS:175613_AT
gattttggcatttcagtttctttttcgatgtatcataatccacttcaaaactcgatcgtt
tagttgttagtaaccccccgttcccgctgaaaagcttgttgaaaattttctaatatttta
cgtattttgtaatatattcatcccccaaaaaatatatatgtatatccattccagctgtga
tgtgaatgcacctcctccaattaatcactcattaattatcgattagaattctgtcaaatt
ttttgtataggaattcgcaaaaatccgcccatacttgactcaattccaatcggcatttga
attttttcaaatatttttttcacacacaattccatcagaatcccgctgctctccccgttc
cacgtttccattttcttttttcaatatttttcaaatttccaattcttctgaaaattcctc
tttttgaaaaaaccaaaaaatagtataatgttcatcctatgtgggatctccaatgttttt
cgtctctgtccacatgtcctcttctcgttctccctgattattcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTGGCATTTCAGTTTCTTTTT 654 429 1205 Antisense
TAATCCACTTCAAAACTCGATCGTT 585 635 1240 Antisense
CCCGTTCCCGCTGAAAAGCTTGTTG 256 259 1281 Antisense
TGTAATATATTCATCCCCCAAAAAA 550 559 1332 Antisense
ATGTATATCCATTCCAGCTGTGATG 69 49 1362 Antisense
AGCTGTGATGTGAATGCACCTCCTC 200 79 1377 Antisense
TCGCAAAAATCCGCCCATACTTGAC 569 599 1459 Antisense
CTTGACTCAATTCCAATCGGCATTT 571 217 1478 Antisense
CACAATTCCATCAGAATCCCGCTGC 172 195 1529 Antisense
TGTGGGATCTCCAATGTTTTTCGTC 302 555 1664 Antisense
TTCTCGTTCTCCCTGATTATTCAGT 316 693 1706 Antisense
Sequence Source GenBank