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[175612_at]

Description g473870 /REP_DB=GenBank Identifier /GB=U07628.1 /PROTEIN_GB=AAA17738.1 /CHR=5 /FEA=Mapped Transcript /DEF=APX-1
Cluster 6grp_total > 89      4grp_total > 05      6grp_cgc > 69      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 141.4
(1.6)
A 		75.8
(-3)
A 		98.8
(-1.4)
A 		160.7
(3)
P 		85
B 126.2
(-0.2)
M 		78.5
(-3)
P 		110.9
(-1.1)
A 		179.3
(3)
P 		101
C 88
(-1.9)
A 		87.2
(-1.9)
A 		74.2
(-3)
A 		147.7
(3)
P 		74
avr 118.5
(-0.2) 		80.5
(-3) 		94.6
(-2) 		162.6
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 372
1 2 3 4 5 6 range
A 191.6
(-1.4)
P 		106.5
(-2.8)
P 		97.3
(-3)
A 		120.2
(-2.6)
P 		327.1
(0.9)
P 		453.6
(3)
P 		356
B 168.5
(-1.2)
P 		145.2
(-1.9)
P 		104.2
(-3)
A 		119.5
(-2.6)
A 		219.3
(0.2)
P 		321.8
(3)
P 		218
C 142
(-1.2)
P 		151.6
(-0.9)
P 		82
(-3)
A 		136.6
(-1.3)
A 		267.9
(2.6)
P 		280.2
(3)
P 		198
avr 167.4
(-1.3) 		134.4
(-2.1) 		94.5
(-3) 		125.4
(-2.3) 		271.4
(1.1) 		351.9
(3) 		257
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 51.5
(3)
A 		16.5
(-3)
A 		25.8
(-1.4)
A 		23.5
(-1.8)
P 		35
B 40.2
(3)
M 		19.4
(-3)
P 		25.7
(-1.2)
A 		38.2
(2.4)
P 		21
C 29.1
(3)
A 		25.1
(-2.7)
A 		25.9
(-1.6)
A 		24.9
(-3)
P 		4
avr 40.3
(3) 		20.3
(-3) 		25.8
(-1.4) 		28.9
(-0.4) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 99
1 2 3 4 5 6 range
A 35.3
(-2.1)
P 		37.9
(-1.9)
P 		21.2
(-3)
A 		30.5
(-2.4)
P 		98.7
(2.2)
P 		110.4
(3)
P 		89
B 58.6
(-0.9)
P 		48.3
(-1.5)
P 		25.3
(-3)
A 		31.6
(-2.6)
A 		89.1
(1)
P 		120
(3)
P 		95
C 52.6
(-0.4)
P 		46.3
(-0.9)
P 		20.9
(-3)
A 		27.5
(-2.5)
A 		86.7
(2.4)
P 		93.8
(3)
P 		73
avr 48.8
(-1.2) 		44.2
(-1.5) 		22.5
(-3) 		29.9
(-2.5) 		91.5
(1.8) 		108.1
(3) 		86
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175612_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19946
Sequence Type Exemplar sequence
Representative Public ID 473870 NCBI
Target Description g473870 /REP_DB=GenBank Identifier /GB=U07628.1 /PROTEIN_GB=AAA17738.1 /CHR=5 /FEA=Mapped Transcript /DEF=APX-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071481(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071481 NCBI Caenorhabditis elegans Anterior Pharynx in eXcess family member (apx-1) (apx-1) mRNA, complete cds. 11/11 A 
K08D9.3 ENSEMBL cdna:known chromosome:CEL140:V:3210018:3222979:1 gene:K08D9.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:3210017-3222957(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol apx-1
Ensembl K08D9.3
Entrez Gene 178759 Entrez gene
SwissProt P41990 EMBL-EBI
WormBase CE30819 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7154 cell communication inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5185 neurohypophyseal hormone activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC69353 Anterior pharynx in excess protein 1 [Caenorhabditis elegans] ref|NP_503882.2| Anterior Pharynx in eXcess family member (apx-1) [Caenorhabditis elegans] sp|P41990|APX1_CAEEL Anterior pharynx in excess protein 1 precursor gb|AAA17738.1| APX-1 0.0
blast D88991 protein apx-1 [imported] - Caenorhabditis elegans 0.0
blast CAE74150 Hypothetical protein CBG21821 [Caenorhabditis briggsae] 1.0E-153
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 4.0E-4
Pfam IPR006209 EMBL-EBI EGF-like domain 3.8E-5
Pfam IPR006209 EMBL-EBI EGF-like domain 3.1E-7
Pfam IPR001774 EMBL-EBI Delta/Serrate/lag-2 (DSL) protein 2.5E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503882.2 1 392-414
K08D9.3 1 392-414
Sequence
Target Sequence 
>C. ELEGANS:175612_AT
catcattttcagcccggttgttgctcttttcccatcattttcgctcaatgttttatcaga
ttgtttatttttattattgctccctgttaacctcgattttctcactaaaaaggcgtcggg
gggctcttttttcccggaatttttaaggaagagtagagaacaatagccaaaaccggccta
atttcgtgctaaatttcgaaaatttggtgtgagggccaaattttcggaaaaagcacaaaa
tttggctctttttccaaaaatttttcccagtttttactcccttttaaaagcccaaattgg
caaaattgagcccccaaatctacccagaaatcccaattttcgctctaaaacatctccccc
agttttcagtctacgaggtatcttctgttttacacgactgttttttacgtctcattttgc
catcaatttcaccactccacactcaaaaatgtaaatatttcgtccttatttttgcaccat
ttctctcccttttaaaatcgcattttttttcttgtatcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCATTTTCAGCCCGGTTGTTGCT 477 213 1703 Antisense
TTTTATTATTGCTCCCTGTTAACCT 146 675 1771 Antisense
TGTTAACCTCGATTTTCTCACTAAA 665 561 1787 Antisense
TAGCCAAAACCGGCCTAATTTCGTG 607 651 1866 Antisense
GCAAAATTGAGCCCCCAAATCTACC 541 317 2002 Antisense
GGTATCTTCTGTTTTACACGACTGT 385 505 2079 Antisense
ACACGACTGTTTTTTACGTCTCATT 575 107 2094 Antisense
CATTTTGCCATCAATTTCACCACTC 549 215 2115 Antisense
ATTTCGTCCTTATTTTTGCACCATT 395 17 2159 Antisense
TTTCTCTCCCTTTTAAAATCGCATT 652 667 2182 Antisense
ATCGCATTTTTTTTCTTGTATCATT 573 37 2199 Antisense
Sequence Source GenBank