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[175611_at]

Description g1006800 /REP_DB=GenBank Identifier /GB=U34812.1 /PROTEIN_GB=AAB01719.1 /CHR=1 /FEA=Mapped Transcript /DEF=MES-3
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_highest_8_8 > 37      4grp_high_8_8 > 02      6grp_highest_nonorm > 73      6grp_total > 66      4grp_total > 06      6grp_highest_sub > In      6grp_cgc > 48      6grp_high1_sub > Da      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 270
1 2 3 4 range
A 321.6
(-0.5)
P 		266.2
(-1.7)
P 		209.8
(-3)
P 		480.2
(3)
P 		270
B 450.1
(3)
P 		241.3
(-3)
P 		302.8
(-1.2)
P 		393.4
(1.4)
P 		209
C 389
(0.4)
P 		282.7
(-3)
P 		349.1
(-0.9)
P 		470.7
(3)
P 		188
avr 386.9
(1) 		263.4
(-3) 		287.2
(-2.2) 		448.1
(3) 		185

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 417
1 2 3 4 5 6 range
A 377.2
(-3)
P 		513.5
(-1)
P 		505.3
(-1.2)
P 		495
(-1.3)
P 		643.5
(0.8)
P 		794.5
(3)
P 		417
B 417.1
(-3)
P 		472.4
(-1.8)
P 		451.7
(-2.3)
P 		452.4
(-2.3)
P 		418
(-3)
P 		703.9
(3)
P 		287
C 442.4
(-3)
P 		655
(1)
P 		529
(-1.4)
P 		590.8
(-0.2)
P 		459.5
(-2.7)
P 		759.6
(3)
P 		317
avr 412.2
(-3) 		547
(-0.6) 		495.3
(-1.5) 		512.7
(-1.2) 		507
(-1.3) 		752.7
(3) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 117.1
(3)
P 		57.8
(-2.7)
P 		54.8
(-3)
P 		70.3
(-1.5)
P 		62
B 143.5
(3)
P 		59.6
(-3)
P 		70.2
(-2.2)
P 		83.8
(-1.3)
P 		84
C 128.8
(3)
P 		81.3
(-2.8)
P 		121.7
(2.1)
P 		79.4
(-3)
P 		49
avr 129.8
(3) 		66.2
(-3) 		82.2
(-1.5) 		77.8
(-1.9) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 69.5
(-3)
P 		182.6
(2.4)
P 		110
(-1.1)
P 		125.6
(-0.3)
P 		194.2
(3)
P 		193.4
(3)
P 		125
B 145.1
(-1.6)
P 		157.2
(-1.1)
P 		109.7
(-3)
P 		119.8
(-2.6)
P 		169.8
(-0.6)
P 		262.5
(3)
P 		153
C 164
(-1)
P 		199.9
(0.6)
P 		134.6
(-2.3)
P 		118.8
(-3)
P 		148.7
(-1.7)
P 		254.3
(3)
P 		136
avr 126.2
(-2.6) 		179.9
(0.1) 		118.1
(-3) 		121.4
(-2.8) 		170.9
(-0.3) 		236.7
(3) 		119
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175611_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19664
Sequence Type Exemplar sequence
Representative Public ID 1006800 NCBI
Target Description g1006800 /REP_DB=GenBank Identifier /GB=U34812.1 /PROTEIN_GB=AAB01719.1 /CHR=1 /FEA=Mapped Transcript /DEF=MES-3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026321(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026321 NCBI Caenorhabditis elegans Maternal Effect Sterile family member (mes-3) (mes-3) mRNA, complete cds. 11/11 None
F54C1.3a ENSEMBL cdna:known chromosome:CEL140:I:4996842:5003161:1 gene:F54C1.3 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000015277 3/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172123 2 1 NM_001026321 175611_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4996839-5003162(+) 91.66 100.0
Public Domain and Genome References
Ensembl F54C1.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK21393 Maternal effect sterile protein 3, isoform a [Caenorhabditis elegans] ref|NP_001021492.1| Maternal Effect Sterile family member (mes-3) [Caenorhabditis elegans] sp|Q10665|MES3_CAEEL Polycomb protein mes-3 (Maternal-effect sterile 3 protein) pir||G87767 protein mes-3 [imported] - Caenorhabditis elegans 0.0
blast AAB01719 MES-3 0.0
blast AAR30207 Maternal effect sterile protein 3, isoform b [Caenorhabditis elegans] ref|NP_001021493.1| Maternal Effect Sterile family member (mes-3) [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:175611_AT
gtgcaattttcaaatctttcagctgaaataaatgttattttcatatttttaaataaatta
attttctattttgagactaatttttaatgaacaatattggccaatttatggaattgccaa
aagtaatttccacccaccgctgatcccaaaaatactacaatttttagcaccttttgaccc
aaagaacgtcgtacttcaatgatcttccagattacacgagtcatcactaagtttttcttc
atttctttttctttcatttaagtttttttctatccattttataagttctttccttgattg
ttctctgctctacaactcttctttctactcacactccatggatgttgtgaagcttctgtt
attttggaaattttataattttacacaactatttgtactatccactttcaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCAATTTTCAAATCTTTCAGCTG 395 481 2555 Antisense
CCACCGCTGATCCCAAAAATACTAC 517 273 2688 Antisense
GCACCTTTTGACCCAAAGAACGTCG 518 291 2721 Antisense
AGAACGTCGTACTTCAATGATCTTC 519 73 2737 Antisense
GATCTTCCAGATTACACGAGTCATC 64 421 2755 Antisense
GAGTCATCACTAAGTTTTTCTTCAT 234 399 2772 Antisense
CTATCCATTTTATAAGTTCTTTCCT 382 223 2824 Antisense
TTGATTGTTCTCTGCTCTACAACTC 25 707 2848 Antisense
TTCTACTCACACTCCATGGATGTTG 266 691 2877 Antisense
CCATGGATGTTGTGAAGCTTCTGTT 186 271 2890 Antisense
ACTATTTGTACTATCCACTTTCAAG 281 101 2942 Antisense
Sequence Source GenBank