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[175610_at] Yeast hypothetical gene L8167.5 like

Description g1255200 /REP_DB=GenBank Identifier /GB=U50829.1 /PROTEIN_GB=AAC47113.1 /CHR=5 /FEA=Mapped Transcript /DEF=SEL-1
Cluster 6grp_highest_10_10 > 56      6grp_high1_10_10 > 75      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 68      6grp_total > 65      4grp_total > 24      6grp_cgc > 56      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1550
1 2 3 4 range
A 1742.6
(-3)
P 		2825.1
(2.4)
P 		2036.7
(-1.5)
P 		2937.5
(3)
P 		1195
B 2082.9
(1.1)
P 		1481
(-3)
P 		1865.8
(-0.4)
P 		2352.4
(3)
P 		871
C 1387.7
(-3)
P 		1749.6
(-1.5)
P 		2807.2
(3)
P 		1957.4
(-0.6)
P 		1420
avr 1737.7
(-3) 		2018.6
(-0.5) 		2236.6
(1.4) 		2415.8
(3) 		678

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2035
1 2 3 4 5 6 range
A 2136.6
(-0)
P 		1779.5
(-3)
P 		2193.6
(0.4)
P 		2062.9
(-0.7)
P 		2505.8
(3)
P 		2388.5
(2)
P 		726
B 1857.6
(-3)
P 		2206.8
(-1.6)
P 		3348.5
(3)
P 		2669.2
(0.3)
P 		1943.2
(-2.7)
P 		3073.6
(1.9)
P 		1491
C 1313.6
(-3)
P 		2313
(0.7)
P 		2132.8
(0)
P 		1585.3
(-2)
P 		1398.8
(-2.7)
P 		2927.8
(3)
P 		1614
avr 1769.3
(-3) 		2099.8
(-1.1) 		2558.3
(1.6) 		2105.8
(-1) 		1949.3
(-1.9) 		2796.6
(3) 		1027
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 648
1 2 3 4 range
A 634.5
(3)
P 		613.3
(2.4)
P 		532.4
(0)
P 		430
(-3)
P 		205
B 664.2
(3)
P 		365.8
(-3)
P 		432.3
(-1.7)
P 		501.3
(-0.3)
P 		298
C 459.4
(-1.8)
P 		503
(-1.4)
P 		978.4
(3)
P 		330
(-3)
P 		648
avr 586
(1.4) 		494
(-1.1) 		647.7
(3) 		420.4
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 827
1 2 3 4 5 6 range
A 393.9
(-3)
P 		632.9
(1)
P 		477.7
(-1.6)
P 		523.2
(-0.9)
P 		756.2
(3)
P 		581.5
(0.1)
P 		362
B 646.3
(-3)
P 		734.5
(-1.9)
P 		813.1
(-1)
P 		707
(-2.3)
P 		789.5
(-1.3)
P 		1146.1
(3)
P 		500
C 486.9
(-1.5)
P 		705.8
(0.5)
P 		542.8
(-1)
P 		318.8
(-3)
P 		452.6
(-1.8)
P 		980.1
(3)
P 		661
avr 509
(-3) 		691.1
(-0.2) 		611.2
(-1.4) 		516.3
(-2.9) 		666.1
(-0.6) 		902.6
(3) 		394
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175610_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19918
Sequence Type Exemplar sequence
Representative Public ID 1255200 NCBI
Target Description g1255200 /REP_DB=GenBank Identifier /GB=U50829.1 /PROTEIN_GB=AAC47113.1 /CHR=5 /FEA=Mapped Transcript /DEF=SEL-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073743(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073743 NCBI Caenorhabditis elegans Suppressor/Enhancer of Lin-12 family member (sel-1) (sel-1) mRNA, complete cds. 11/11 A 
F45D3.5.2 ENSEMBL cdna:known chromosome:CEL140:V:12563313:12565962:1 gene:F45D3.5 11/11 None
F45D3.5.1 ENSEMBL cdna:known chromosome:CEL140:V:12563320:12565976:1 gene:F45D3.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:12563312-12565971(+) 100.0 100.0
Public Domain and Genome References
Gene Title Yeast hypothetical gene L8167.5 like
Gene Symbol sel-1
Ensembl F45D3.5
Entrez Gene 179720 Entrez gene
SwissProt Q20423 EMBL-EBI
WormBase CE16043 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1590892_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE:1591524_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE_2:CFA.18769.1.S1_S_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE_2:CFA.5472.1.A1_AT similar to sel-1 suppressor of lin-12-like cfa
CANINE_2:CFAAFFX.26500.1.S1_S_AT similar to sel-1 suppressor of lin-12-like cfa
DROSOPHILA_2:1632236_AT dm
DROSGENOME1:144215_AT dm
CHICKEN:GGA.10455.1.S1_AT sel-1 suppressor of lin-12-like (C. elegans) gga
CHICKEN:GGA.19683.1.S1_AT sel-1 suppressor of lin-12-like (C. elegans) gga
HG-U133A:202064_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202064_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202064_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202062_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202062_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A:202062_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBA:U11037_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HUGENEFL:U11037_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBA:RC_AA253459_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A:202063_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202063_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202063_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:G6518494_3P_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:G6851088_3P_A_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:G4826995_3P_A_AT sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:HS.181300.0.S3_3P_A_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A_2:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-FOCUS:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133A:202061_S_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U95AV2:40689_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U95C:65740_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U95E:76761_AT sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBB:RC_R19183_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBD:RC_AA419225_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:HS.98269.0.A1_3P_S_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133_PLUS_2:230265_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HG-U133B:230265_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
HU35KSUBC:RC_AA150726_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
U133_X3P:HS.181300.1.A1_3P_AT Sel-1 suppressor of lin-12-like (C. elegans) hs
MG-U74AV2:92870_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1453559_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1453559_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1453559_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1430692_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1430692_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1430692_A_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1425188_S_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1425188_S_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1425188_S_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430A:1425187_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430A_2:1425187_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOUSE430_2:1425187_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) mm
MOE430B:1436774_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
MOUSE430_2:1436774_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
MU19KSUBA:TC16150_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
MU19KSUBB:TC31599_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans), mRNA (cDNA clone MGC:25250 IMAGE:4457637) mm
RAE230A:1376073_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAT230_2:1376073_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAE230A:1373313_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAT230_2:1373313_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAE230B:1392955_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RAT230_2:1392955_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34A:RC_AA859897_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34B:RC_AI044821_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34C:RC_AI070676_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
RG-U34C:RC_AI072921_AT Sel1 (suppressor of lin-12) 1 homolog (C. elegans) rn
Protein Similarities
Method ID Description E-Value
blast CAB01505 Hypothetical protein F45D3.5 [Caenorhabditis elegans] ref|NP_506144.1| Suppressor/Enhancer of Lin-12 family member (sel-1) [Caenorhabditis elegans] gb|AAC47113.1| SEL-1 0.0
blast AAC47112 sel-1 gene product 0.0
blast CAE75512 Hypothetical protein CBG23527 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_506144.1 1 656-678
F45D3.5.2 1 656-678
F45D3.5.1 1 656-678
Sequence
Target Sequence 
>C. ELEGANS:175610_AT
aattgatacgattctctccaaatgtaaaaaatgaaaaacaaaatgccacatccctgtaat
ttatttaattatcttccctgcccagttaagcacattccgcgccttcttttaatagttgta
atattcacatcagcctactcgggtctacgctgtcccttctaatcatcaaacatttgcctt
cttttgtgttcgtgtttcttttctctgttagatggtccaattagaattcctcatttcgtg
tgatttacttgccgattttttagtaaaaaatcggtttttttctgatgtacggtat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGATACGATTCTCTCCAAATGT 401 179 2073 Antisense
AATGCCACATCCCTGTAATTTATTT 454 167 2114 Antisense
TTCCGCGCCTTCTTTTAATAGTTGT 322 697 2167 Antisense
GTAATATTCACATCAGCCTACTCGG 667 461 2190 Antisense
GCTGTCCCTTCTAATCATCAAACAT 371 295 2221 Antisense
CAAACATTTGCCTTCTTTTGTGTTC 434 191 2239 Antisense
TCTTTTGTGTTCGTGTTTCTTTTCT 353 615 2252 Antisense
GTTTCTTTTCTCTGTTAGATGGTCC 13 449 2266 Antisense
GAATTCCTCATTTCGTGTGATTTAC 51 325 2296 Antisense
GTGTGATTTACTTGCCGATTTTTTA 148 489 2310 Antisense
TCGGTTTTTTTCTGATGTACGGTAT 362 265 2343 Antisense
Sequence Source GenBank