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[175609_at]

Description g1279776 /REP_DB=GenBank Identifier /GB=U52516.1 /PROTEIN_GB=AAA97926.1 /CHR=5 /FEA=Mapped Transcript /DEF=hum-2
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 47      6grp_total > 84      4grp_total > 27      6grp_highest_sub > 04_05_06      6grp_cgc > 77      6grp_high1_sub > 04      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1542
1 2 3 4 range
A 2587.2
(-2.4)
P 		3591.2
(3)
P 		2471.4
(-3)
P 		3596.1
(3)
P 		1125
B 2195
(-2.3)
P 		2680.8
(-0.1)
P 		2054.5
(-3)
P 		3346.8
(3)
P 		1292
C 2740.8
(-1)
P 		2625.6
(-2.8)
P 		2615.3
(-3)
P 		2998.3
(3)
P 		383
avr 2507.7
(-2.2) 		2965.9
(0.8) 		2380.4
(-3) 		3313.7
(3) 		933

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2731
1 2 3 4 5 6 range
A 3430.8
(-2.1)
P 		3148.2
(-3)
P 		3339.3
(-2.4)
P 		3325.7
(-2.4)
P 		4975
(3)
P 		4060.6
(-0)
P 		1827
B 2920
(-1.3)
P 		2580.2
(-2.2)
P 		2283.8
(-3)
P 		4546.1
(3)
P 		3023
(-1)
P 		3936.9
(1.4)
P 		2262
C 2244.4
(-3)
P 		3158.9
(0.7)
P 		2944.6
(-0.2)
P 		3727.4
(3)
P 		3459.6
(1.9)
P 		3200.3
(0.9)
P 		1483
avr 2865.1
(-2.9) 		2962.4
(-2.4) 		2855.9
(-3) 		3866.4
(3) 		3819.2
(2.7) 		3732.6
(2.2) 		1011
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 466
1 2 3 4 range
A 942
(3)
P 		779.6
(0.7)
P 		646.1
(-1.3)
P 		526.4
(-3)
P 		416
B 700
(2.7)
P 		662.1
(1.7)
P 		476.1
(-3)
P 		713.2
(3)
P 		237
C 907.3
(2.9)
P 		754.9
(0.7)
P 		911.5
(3)
P 		505.6
(-3)
P 		406
avr 849.8
(3) 		732.2
(0.4) 		677.9
(-0.8) 		581.7
(-3) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 947
1 2 3 4 5 6 range
A 632.4
(-3)
P 		1119.7
(0.4)
P 		727.2
(-2.3)
P 		843.5
(-1.5)
P 		1501.3
(3)
P 		988.6
(-0.5)
P 		869
B 1016
(0)
P 		858.8
(-1)
P 		554.6
(-3)
P 		1204.1
(1.3)
P 		1228.2
(1.4)
P 		1468.1
(3)
P 		914
C 831.9
(-1.7)
P 		963.9
(0.5)
P 		749.4
(-3)
P 		749.6
(-3)
P 		1119.5
(3)
P 		1071.3
(2.2)
P 		370
avr 826.8
(-1.5) 		980.8
(0) 		677.1
(-3) 		932.4
(-0.5) 		1283
(3) 		1176
(1.9) 		606
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175609_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19909
Sequence Type Exemplar sequence
Representative Public ID 1279776 NCBI
Target Description g1279776 /REP_DB=GenBank Identifier /GB=U52516.1 /PROTEIN_GB=AAA97926.1 /CHR=5 /FEA=Mapped Transcript /DEF=hum-2
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073032(11), NM_001028715(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073032 NCBI Caenorhabditis elegans Heavy chain, Unconventional Myosin family member (hum-2) (hum-2) mRNA, complete cds. 11/11 A 
NM_001028715 NCBI Caenorhabditis elegans Heavy chain, Unconventional Myosin family member (hum-2) (hum-2) mRNA, complete cds. 11/11 None
F36D4.3b ENSEMBL cdna:known chromosome:CEL140:V:9388738:9402646:1 gene:F36D4.3 11/11 A 
F36D4.3a ENSEMBL cdna:known chromosome:CEL140:V:9388738:9402647:1 gene:F36D4.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179321 5 2 NM_001028715 175609_at (11)
NM_073032 175609_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9388737-9402646(+) 100.0 100.0
Public Domain and Genome References
Ensembl F36D4.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAR04675 Heavy chain, unconventional myosin protein 2, isoform a [Caenorhabditis elegans] ref|NP_505433.3| Heavy chain, Unconventional Myosin family member (hum-2) [Caenorhabditis elegans] 0.0
blast AAR04676 Heavy chain, unconventional myosin protein 2, isoform b [Caenorhabditis elegans] ref|NP_001023886.1| Heavy chain, Unconventional Myosin family member (hum-2) [Caenorhabditis elegans] gb|AAA97926.1| hum-2 [Caenorhabditis elegans] 0.0
blast CAE72166 Hypothetical protein CBG19269 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 1.2E-45
Pfam IPR001609 EMBL-EBI Myosin head (motor domain) 1.0E-126
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 6.3E-8
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 6.4E-8
Pfam IPR000048 EMBL-EBI IQ calmodulin-binding region 6.4E-9
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 1.2E-45
Sequence
Target Sequence 
>C. ELEGANS:175609_AT
ttcattcttttttttcataattcctaaccttgcttactaatcatatttggatactgatct
agtcggtttttcaagaaatgtaccctatttctttcgcctatgtgcatctaaaccaatgta
aaaatagtcatgaacagatcccccatcaattctcaaaatacttgtactgtaatcttattt
atttgcttttattcgcacccagtttttcgagatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCATTCTTTTTTTTCATAATTCCT 383 689 5597 Antisense
TCATAATTCCTAACCTTGCTTACTA 51 621 5611 Antisense
AACCTTGCTTACTAATCATATTTGG 383 147 5622 Antisense
GGATACTGATCTAGTCGGTTTTTCA 180 511 5645 Antisense
GAAATGTACCCTATTTCTTTCGCCT 268 361 5671 Antisense
TCTTTCGCCTATGTGCATCTAAACC 314 615 5686 Antisense
AATAGTCATGAACAGATCCCCCATC 84 173 5719 Antisense
ATCCCCCATCAATTCTCAAAATACT 72 39 5734 Antisense
GTACTGTAATCTTATTTATTTGCTT 169 459 5760 Antisense
TTATTTGCTTTTATTCGCACCCAGT 475 679 5775 Antisense
ATTCGCACCCAGTTTTTCGAGATGA 339 9 5787 Antisense
Sequence Source GenBank