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[175607_s_at]

Description g1161371 /REP_DB=GenBank Identifier /GB=U38935.1 /PROTEIN_GB=AAB60254.1 /CHR=4 /FEA=Mapped Transcript /DEF=LIN-1
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 45      4grp_high_8_8 > 09      6grp_highest_nonorm > 50      6grp_total > 28      4grp_total > 22      6grp_cgc > 03      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 330
1 2 3 4 range
A 765.7
(1.7)
P 		507.1
(-3)
P 		543.9
(-2.3)
P 		837.5
(3)
P 		330
B 824.9
(3)
P 		632.2
(-2)
P 		595.4
(-3)
P 		800.3
(2.4)
P 		230
C 803.3
(3)
P 		642.3
(-3)
P 		676.9
(-1.7)
P 		718.9
(-0.1)
P 		161
avr 798
(3) 		593.9
(-3) 		605.4
(-2.7) 		785.6
(2.6) 		204

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 442
1 2 3 4 5 6 range
A 750.2
(3)
P 		580.5
(0.5)
P 		359.2
(-2.8)
P 		348.8
(-3)
P 		534.4
(-0.2)
P 		445.6
(-1.6)
P 		401
B 703.6
(3)
P 		553.1
(0.7)
P 		307.8
(-3)
P 		539.5
(0.5)
P 		358.8
(-2.2)
P 		428.2
(-1.2)
P 		396
C 663.9
(3)
P 		527.6
(0.5)
P 		339
(-3)
P 		409
(-1.7)
P 		525.6
(0.4)
P 		371.7
(-2.4)
P 		325
avr 705.9
(3) 		553.7
(0.5) 		335.3
(-3) 		432.4
(-1.4) 		472.9
(-0.8) 		415.2
(-1.7) 		371
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 169
1 2 3 4 range
A 278.8
(3)
P 		110.1
(-3)
P 		142.2
(-1.9)
P 		122.6
(-2.6)
P 		169
B 263
(3)
P 		156.1
(-2.1)
P 		138
(-3)
P 		170.5
(-1.4)
P 		125
C 265.9
(3)
P 		184.7
(-0.4)
P 		235.9
(1.8)
P 		121.2
(-3)
P 		145
avr 269.2
(3) 		150.3
(-2.4) 		172
(-1.4) 		138.1
(-3) 		131

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 171
1 2 3 4 5 6 range
A 138.3
(-0.2)
P 		206.4
(3)
P 		78.2
(-3)
P 		88.5
(-2.5)
P 		161.3
(0.9)
P 		108.5
(-1.6)
P 		128
B 244.8
(3)
P 		184.1
(0.9)
P 		74.7
(-3)
P 		142.9
(-0.6)
P 		145.8
(-0.5)
P 		159.7
(-0)
P 		170
C 246.1
(3)
P 		161
(-0.1)
P 		86.3
(-2.8)
P 		82.2
(-3)
P 		170.1
(0.2)
P 		124.4
(-1.5)
P 		164
avr 209.7
(3) 		183.8
(1.8) 		79.7
(-3) 		104.5
(-1.9) 		159.1
(0.7) 		130.9
(-0.6) 		130
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175607_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19895
Sequence Type Exemplar sequence
Representative Public ID 1161371 NCBI
Target Description g1161371 /REP_DB=GenBank Identifier /GB=U38935.1 /PROTEIN_GB=AAB60254.1 /CHR=4 /FEA=Mapped Transcript /DEF=LIN-1
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027880(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027880 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-1) (lin-1) mRNA, complete cds. 11/11 None
C37F5.1.1 ENSEMBL cdna:known chromosome:CEL140:IV:2275862:2300324:-1 gene:C37F5.1 11/11 None
C37F5.1.2 ENSEMBL cdna:known chromosome:CEL140:IV:2275863:2300350:-1 gene:C37F5.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_075671 2/11 Cross Hyb Matching Probes A 
SNAP00000020565 2/11 Cross Hyb Matching Probes None
SNAP00000022307 2/11 Cross Hyb Matching Probes None
GENEFINDER00000022349 2/11 Cross Hyb Matching Probes None
Y73B3A.5 2/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2275865-2300332(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol lin-1
Ensembl C37F5.1
Entrez Gene 177016 Entrez gene
SwissProt Q965J5 EMBL-EBI
WormBase CE31440 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFAAFFX.23339.1.S1_AT similar to ELK1 protein cfa
HG-U133_PLUS_2:210850_S_AT ELK1, member of ETS oncogene family hs
HG-U133A:210850_S_AT ELK1, member of ETS oncogene family hs
HG-FOCUS:210850_S_AT ELK1, member of ETS oncogene family hs
HG-U133A_2:210850_S_AT ELK1, member of ETS oncogene family hs
HG-U95AV2:1781_AT ELK1, member of ETS oncogene family hs
HC-G110:1781_AT ELK1, member of ETS oncogene family hs
HG-U133_PLUS_2:210376_X_AT ELK1, member of ETS oncogene family hs
HG-U133A:210376_X_AT ELK1, member of ETS oncogene family hs
HG-U133A_2:210376_X_AT ELK1, member of ETS oncogene family hs
HG-U133A_2:203617_X_AT ELK1, member of ETS oncogene family hs
HG-U133A:203617_X_AT ELK1, member of ETS oncogene family hs
HG-U133_PLUS_2:203617_X_AT ELK1, member of ETS oncogene family hs
HUGENEFL:M25269_AT ELK1, member of ETS oncogene family hs
U133_X3P:G538208_3P_S_AT ELK1, member of ETS oncogene family hs
U133_X3P:G538208_3P_A_AT ELK1, member of ETS oncogene family hs
U133_X3P:G4100455_3P_A_AT ELK1, member of ETS oncogene family hs
U133_X3P:G11496880_3P_X_AT ELK1, member of ETS oncogene family hs
U133_X3P:G11496880_3P_S_AT ELK1, member of ETS oncogene family hs
U133_X3P:G11496880_3P_AT ELK1, member of ETS oncogene family hs
U133_X3P:HS.247775.0.S1_3P_S_AT ELK1, member of ETS oncogene family hs
U133_X3P:210376_3P_X_AT ELK1, member of ETS oncogene family hs
U133_X3P:203617_3P_X_AT ELK1, member of ETS oncogene family hs
HG-U95AV2:33275_AT ELK1, member of ETS oncogene family hs
MOUSE430_2:1421896_AT ELK1, member of ETS oncogene family mm
MOE430A:1421896_AT ELK1, member of ETS oncogene family mm
MOUSE430A_2:1421896_AT ELK1, member of ETS oncogene family mm
MU11KSUBB:X87257_S_AT ELK1, member of ETS oncogene family mm
MG-U74AV2:96593_AT ELK1, member of ETS oncogene family mm
MG-U74BV2:111608_S_AT ELK1, member of ETS oncogene family mm
MG-U74BV2:111609_R_AT ELK1, member of ETS oncogene family mm
MG-U74BV2:111610_AT ELK1, member of ETS oncogene family mm
MG-U74CV2:137360_AT ELK1, member of ETS oncogene family mm
MOE430A:1421897_AT ELK1, member of ETS oncogene family mm
MOUSE430A_2:1421897_AT ELK1, member of ETS oncogene family mm
MOUSE430_2:1421897_AT ELK1, member of ETS oncogene family mm
MOE430B:1446390_AT ELK1, member of ETS oncogene family mm
MOUSE430_2:1446390_AT ELK1, member of ETS oncogene family mm
MU19KSUBC:TC35902_S_AT ELK1, member of ETS oncogene family (Elk1), mRNA mm
RAE230B:1385063_AT ELK1, member of ETS oncogene family rn
RAT230_2:1385063_AT ELK1, member of ETS oncogene family rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAC17530 Abnormal cell lineage protein 1 [Caenorhabditis elegans] ref|NP_001023051.1| abnormal cell LINeage family member (lin-1) [Caenorhabditis elegans] gb|AAB60254.1| LIN-1 gb|AAA93079.1| LIN-1 1.0E-180
blast CAE68200 Hypothetical protein CBG13868 [Caenorhabditis briggsae] 1.0E-117
blast AAK39362 Hypothetical protein Y73B3A.5 [Caenorhabditis elegans] ref|NP_508072.1| Y73B3A.5 [Caenorhabditis elegans] 1.0E-103
Protein Domains
Database ID Description E-Value
Pfam IPR000418 EMBL-EBI Ets-domain 1.9E-53
Sequence
Target Sequence 
>C. ELEGANS:175607_S_AT
gactcccggtcttggcgagagtcaggtgttccaattcccgccggtctccgcattccaggc
cacaaatccgctgctaaacacattctccaaccttatcagcccgatggccccgtttatgat
gcccccatcacagtcgagtacctcgttcaagttcccatcgtcaacggattctttaaaaac
acctacagtacccataaaaatgccaactttgtagtttgaactttggagcgagaaaaaaat
aaaaattttcgaaaagcaaattttttttttcggacatttttttcccatttttttttgtta
aactttgccatgggttttcgatagtcttctttttccaattccctcttcattattccaaaa
aatcaatcaatattttgtattctccatgatctcccccaccggatgagagagcgagtcgtg
taaatctcaataaaaactttaacttttctttttttttactttccatatatatttttttat
tctgccctcaaaatattcgcaataataatataatttgtatattttgtgccttcaccatgt
cgtttatttggtttttagtgcattttttacttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTCCCGGTCTTGGCGAGAGTCAG 637 367 1166 Antisense
GCGAGAGTCAGGTGTTCCAATTCCC 528 287 1180 Antisense
TTAAACTTTGCCATGGGTTTTCGAT 683 683 1463 Antisense
TTCCCTCTTCATTATTCCAAAAAAT 646 697 1504 Antisense
TATTTTGTATTCTCCATGATCTCCC 403 663 1536 Antisense
ATATATTTTTTTATTCTGCCCTCAA 217 19 1632 Antisense
TATTCTGCCCTCAAAATATTCGCAA 197 665 1643 Antisense
GTATATTTTGTGCCTTCACCATGTC 559 453 1682 Antisense
TGCCTTCACCATGTCGTTTATTTGG 212 583 1692 Antisense
GTCGTTTATTTGGTTTTTAGTGCAT 604 473 1704 Antisense
TGGTTTTTAGTGCATTTTTTACTTG 370 549 1714 Antisense
Sequence Source GenBank