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[175603_at] UNC-7-like protein

Description g1930095 /REP_DB=GenBank Identifier /GB=U93195.1 /PROTEIN_GB=AAB51534.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-9
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 20      6grp_total > 06      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 11      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1802
1 2 3 4 range
A 2425.9
(3)
P 		1086.1
(-2.3)
P 		917.5
(-3)
P 		942.3
(-2.9)
P 		1508
B 2032.7
(3)
P 		1513.9
(0.7)
P 		1124.1
(-1)
P 		664.9
(-3)
P 		1368
C 2367.7
(3)
P 		1462.2
(-0.1)
P 		1105.9
(-1.3)
P 		623.6
(-3)
P 		1744
avr 2275.4
(3) 		1354.1
(-0.6) 		1049.2
(-1.8) 		743.6
(-3) 		1532

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2230
1 2 3 4 5 6 range
A 2608.9
(3)
P 		1194.9
(-0.9)
P 		1065.2
(-1.2)
P 		674.8
(-2.3)
P 		937.1
(-1.6)
P 		417.9
(-3)
P 		2191
B 1834.6
(3)
P 		1170.4
(-0.5)
P 		854.6
(-2.2)
P 		869.2
(-2.2)
P 		914.4
(-1.9)
P 		709.9
(-3)
P 		1125
C 1834.4
(3)
P 		1326.4
(0.9)
P 		866.3
(-1)
P 		817.2
(-1.2)
P 		609.5
(-2)
P 		378.7
(-3)
P 		1456
avr 2092.6
(3) 		1230.6
(-0.3) 		928.7
(-1.4) 		787.1
(-1.9) 		820.3
(-1.8) 		502.2
(-3) 		1590
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 778
1 2 3 4 range
A 883.3
(3)
P 		235.8
(-2.2)
P 		239.9
(-2.2)
P 		137.9
(-3)
P 		745
B 648.2
(3)
P 		373.9
(-0.2)
P 		260.5
(-1.6)
P 		141.7
(-3)
P 		507
C 783.8
(3)
P 		420.4
(-0.2)
P 		385.4
(-0.5)
P 		105.1
(-3)
P 		679
avr 771.8
(3) 		343.4
(-1) 		295.3
(-1.4) 		128.2
(-3) 		644

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 578
1 2 3 4 5 6 range
A 480.9
(3)
P 		425
(2.1)
P 		232
(-0.9)
P 		171.1
(-1.9)
P 		282.8
(-0.1)
P 		101.7
(-3)
P 		379
B 638.4
(3)
P 		389.6
(-0.5)
P 		207.5
(-3)
P 		230.2
(-2.7)
P 		371.5
(-0.7)
P 		264.7
(-2.2)
P 		431
C 679.9
(3)
P 		404.7
(0)
P 		220.5
(-2)
P 		164.3
(-2.6)
P 		197.2
(-2.2)
P 		126.8
(-3)
P 		553
avr 599.7
(3) 		406.4
(0.3) 		220
(-2.2) 		188.5
(-2.7) 		283.8
(-1.4) 		164.4
(-3) 		435
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175603_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20030
Sequence Type Exemplar sequence
Representative Public ID 1930095 NCBI
Target Description g1930095 /REP_DB=GenBank Identifier /GB=U93195.1 /PROTEIN_GB=AAB51534.1 /CHR=X /FEA=Mapped Transcript /DEF=UNC-9
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171790 NCBI Caenorhabditis elegans UNCoordinated family member (unc-9) (unc-9) mRNA, complete cds. 11/11 A 
R12H7.1.3 ENSEMBL cdna:known chromosome:CEL140:X:13201692:13216652:1 gene:R12H7.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:13201691-13216652(+) 98.08 100.0
Public Domain and Genome References
Gene Title UNC-7-like protein
Gene Symbol unc-9
Ensembl R12H7.1
Entrez Gene 181443 Entrez gene
SwissProt O01393 EMBL-EBI
WormBase CE28246 Wormbase
Functional Annotations
Ortholog
ID Title Organism
DROSOPHILA_2:1628363_AT innexin 3 dm
DROSGENOME1:154674_AT innexin 3 dm
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5921 gap junction inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB61030 Hypothetical protein R12H7.1 [Caenorhabditis elegans] ref|NP_741917.1| UNCoordinated family member (unc-9) [Caenorhabditis elegans] sp|O01393|UNC9_CAEEL Innexin unc-9 (Uncoordinated protein 9) emb|CAE61397.1| Hypothetical protein CBG05256 [Caenorhabditis briggsae] gb|AAB51534.1| UNC-9 [Caenorhabditis elegans] 0.0
blast T24203 hypothetical protein R12H7.1 - Caenorhabditis elegans 0.0
blast CAA94607 Hypothetical protein R07D5.1 [Caenorhabditis elegans] ref|NP_510515.1| UNCoordinated family member (unc-7) [Caenorhabditis elegans] sp|Q03412|UNC7_CAEEL Innexin unc-7 (Uncoordinated protein 7) emb|CAA79529.1| hypothetical polypeptide [Caenorhabditis elegans] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR000990 EMBL-EBI Innexin 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741917.1 4 29-51,104-126,195-217,285-307
R12H7.1.3 4 29-51,104-126,195-217,285-307
Sequence
Target Sequence 
>C. ELEGANS:175603_AT
gttgctcaaaactttatcgatccattgtcattttcacctcgagctttttgtcaatttcac
atttaattcaattgttttctaattttttttttgtaaattctatttaccaatttccaaatt
ttctattatcaatttatcaaaactttaatgacgcggttgtctttatgaatgttcataact
ttcaaattattatacctaaatttcctctaaaattaactcccaaaagtcttttgtaatttt
tttctccaattttattccctttccccccatcctcccacttctccttccttctgtggtttc
tttcaaatggcatcatgtcttttcaaattacctggattcacgtttgtaatatagataatt
tttgtccttccccccaaactcacttgatacaaaaattaactttctcgccctgtaattcat
atttcttccagtttgtcttcatcatccacctgccaatgttcagttttcaccaaagttttg
aaaacggaacccacaaactttgccatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGCTCAAAACTTTATCGATCCAT 635 439 1632 Antisense
ATCGATCCATTGTCATTTTCACCTC 165 37 1647 Antisense
TTTTCACCTCGAGCTTTTTGTCAAT 70 677 1662 Antisense
GACGCGGTTGTCTTTATGAATGTTC 417 381 1781 Antisense
CTTCCTTCTGTGGTTTCTTTCAAAT 635 219 1915 Antisense
GGCATCATGTCTTTTCAAATTACCT 381 537 1940 Antisense
TACAAAAATTAACTTTCTCGCCCTG 47 641 2019 Antisense
CTCGCCCTGTAATTCATATTTCTTC 467 233 2035 Antisense
TATTTCTTCCAGTTTGTCTTCATCA 186 663 2051 Antisense
ATCATCCACCTGCCAATGTTCAGTT 471 29 2072 Antisense
ACGGAACCCACAAACTTTGCCATAT 289 95 2115 Antisense
Sequence Source GenBank