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[175599_s_at]

Description g1644449 /REP_DB=GenBank Identifier /GB=U67864.1 /PROTEIN_GB=AAC47313.1 /CHR=1 /FEA=Mapped Transcript /DEF=MEX-3
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 78      4grp_highest_8_8 > 39      4grp_high_8_8 > 12      6grp_highest_nonorm > 99      6grp_total > 78      4grp_total > 12      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Cu      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 342
1 2 3 4 range
A 802.1
(2.1)
P 		512.7
(-3)
P 		656.3
(-0.5)
P 		852.6
(3)
P 		340
B 592.5
(-1.6)
P 		611.6
(-1.3)
P 		512.4
(-3)
P 		854.1
(3)
P 		342
C 584.7
(-2.1)
P 		755
(3)
P 		629.1
(-0.8)
P 		554.9
(-3)
P 		200
avr 659.8
(-0.7) 		626.4
(-1.9) 		599.3
(-3) 		753.9
(3) 		155

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2272
1 2 3 4 5 6 range
A 576
(-2.3)
P 		447.2
(-2.7)
P 		335.1
(-3)
P 		441.1
(-2.7)
P 		1103.4
(-0.6)
P 		2296.3
(3)
P 		1961
B 852.3
(-1.7)
P 		483.8
(-2.7)
P 		370.1
(-3)
P 		506.1
(-2.6)
P 		1090.4
(-1.1)
P 		2607.4
(3)
P 		2237
C 550.9
(-2.7)
P 		508.5
(-2.8)
P 		439.3
(-3)
P 		432.9
(-3)
P 		936.9
(-1.5)
P 		2495.9
(3)
P 		2063
avr 659.7
(-2.2) 		479.8
(-2.7) 		381.5
(-3) 		460
(-2.8) 		1043.6
(-1.1) 		2466.5
(3) 		2085
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 292
(3)
P 		111.3
(-3)
P 		171.6
(-1)
P 		124.8
(-2.6)
P 		181
B 188.9
(3)
P 		151
(-0.2)
P 		118.7
(-3)
P 		182
(2.4)
P 		70
C 193.6
(1.8)
P 		217.1
(2.9)
P 		219.3
(3)
P 		93.6
(-3)
P 		126
avr 224.8
(3) 		159.8
(-1.3) 		169.9
(-0.6) 		133.5
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 899
1 2 3 4 5 6 range
A 106.2
(-2.6)
P 		159.1
(-1.9)
P 		73
(-3)
P 		111.9
(-2.5)
P 		333
(0.2)
P 		559.1
(3)
P 		486
B 296.6
(-1.6)
P 		161
(-2.5)
P 		89.9
(-3)
P 		134
(-2.7)
P 		443
(-0.6)
P 		972.3
(3)
P 		882
C 204.2
(-2.1)
P 		155.2
(-2.5)
P 		111.8
(-2.8)
P 		87.1
(-3)
P 		303.2
(-1.3)
P 		835.5
(3)
P 		748
avr 202.3
(-2) 		158.4
(-2.4) 		91.6
(-3) 		111
(-2.8) 		359.7
(-0.7) 		789
(3) 		697
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175599_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19699
Sequence Type Exemplar sequence
Representative Public ID 1644449 NCBI
Target Description g1644449 /REP_DB=GenBank Identifier /GB=U67864.1 /PROTEIN_GB=AAC47313.1 /CHR=1 /FEA=Mapped Transcript /DEF=MEX-3
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058280(11), NM_001026318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058280 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-3) (mex-3) mRNA, complete cds. 11/11 A 
NM_001026318 NCBI Caenorhabditis elegans Muscle EXcess family member (mex-3) (mex-3) mRNA, complete cds. 11/11 None
F53G12.5b ENSEMBL cdna:known chromosome:CEL140:I:127297:134242:1 gene:F53G12.5 11/11 A 
F53G12.5a.2 ENSEMBL cdna:known chromosome:CEL140:I:128695:133809:1 gene:F53G12.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:128694-133809(+) 100.0 100.0
Public Domain and Genome References
Ensembl F53G12.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73873 Muscle excess protein 3, isoform b [Caenorhabditis elegans] ref|NP_490681.2| Muscle EXcess family member (mex-3) [Caenorhabditis elegans] 0.0
blast AAK73872 Muscle excess protein 3, isoform a [Caenorhabditis elegans] ref|NP_001021489.1| Muscle EXcess family member (mex-3) [Caenorhabditis elegans] 0.0
blast AAC47313 MEX-3 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004087 EMBL-EBI KH 5.9E-6
Pfam IPR004087 EMBL-EBI KH 5.9E-6
Sequence
Target Sequence 
>C. ELEGANS:175599_S_AT
gataagctgtggatccattcatcattccattactatcgtgtagactctcatctagcaaaa
acccatcctcaacgagttccaaattcatctttccattctttaaaagactctttttcccat
tttctactttgttcatcggtgtacgagtccctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAGCTGTGGATCCATTCATCAT 432 423 1259 Antisense
GCTGTGGATCCATTCATCATTCCAT 521 295 1264 Antisense
TCATCATTCCATTACTATCGTGTAG 77 621 1277 Antisense
CCATTACTATCGTGTAGACTCTCAT 684 269 1285 Antisense
GCAAAAACCCATCCTCAACGAGTTC 182 317 1313 Antisense
ACCCATCCTCAACGAGTTCCAAATT 137 89 1319 Antisense
TCAACGAGTTCCAAATTCATCTTTC 520 631 1327 Antisense
CAAATTCATCTTTCCATTCTTTAAA 438 193 1338 Antisense
ATCTTTCCATTCTTTAAAAGACTCT 295 31 1345 Antisense
TACTTTGTTCATCGGTGTACGAGTC 526 643 1383 Antisense
TTGTTCATCGGTGTACGAGTCCCTC 430 673 1387 Antisense
Sequence Source GenBank