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[175598_at]

Description g1927199 /REP_DB=GenBank Identifier /GB=U60059.1 /PROTEIN_GB=AAC47518.1 /CHR=5 /FEA=Mapped Transcript /DEF=UNC-76
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 29      4grp_highest_8_8 > 56      4grp_high_8_8 > 35      6grp_highest_nonorm > 76      6grp_total > 39      4grp_total > 44      6grp_cgc > 03      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 533
1 2 3 4 range
A 1270.4
(3)
P 		1098.1
(0.5)
P 		963.7
(-1.5)
P 		857.3
(-3)
P 		413
B 1270
(2.3)
P 		1320.4
(3)
P 		1027.1
(-1.2)
P 		897.6
(-3)
P 		423
C 1086.9
(0.4)
P 		1312.5
(3)
P 		839.8
(-2.4)
P 		787.8
(-3)
P 		525
avr 1209.1
(2.5) 		1243.7
(3) 		943.5
(-1.5) 		847.6
(-3) 		396

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 888
1 2 3 4 5 6 range
A 1411.8
(2.5)
P 		1241.4
(1.2)
P 		710.8
(-3)
P 		1016.7
(-0.6)
P 		1470.3
(3)
P 		1208.2
(0.9)
P 		760
B 1584.8
(3)
P 		1360.8
(1.5)
P 		697.2
(-3)
P 		1127.6
(-0.1)
P 		1079.8
(-0.4)
P 		1177.2
(0.2)
P 		888
C 1433.9
(3)
P 		1177.7
(-0.1)
P 		943.4
(-3)
P 		1167.2
(-0.3)
P 		1080.9
(-1.3)
P 		1100
(-1.1)
P 		491
avr 1476.8
(3) 		1260
(1.1) 		783.8
(-3) 		1103.8
(-0.2) 		1210.3
(0.7) 		1161.8
(0.3) 		693
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 462.6
(3)
P 		238.4
(-1)
P 		251.9
(-0.8)
P 		125.5
(-3)
P 		337
B 405
(3)
P 		326.1
(0.8)
P 		238
(-1.7)
P 		191.3
(-3)
P 		214
C 359.8
(2.6)
P 		377.4
(3)
P 		292.7
(0.9)
P 		132.8
(-3)
P 		245
avr 409.1
(3) 		314
(0.8) 		260.9
(-0.4) 		149.9
(-3) 		259

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 397
1 2 3 4 5 6 range
A 260.2
(-0.8)
P 		441.5
(3)
P 		154.8
(-3)
P 		257.9
(-0.9)
P 		443.7
(3)
P 		294.2
(-0.1)
P 		289
B 551.4
(3)
P 		453
(1.5)
P 		169.3
(-3)
P 		298.7
(-1)
P 		438.7
(1.2)
P 		439
(1.2)
P 		382
C 531.5
(3)
P 		359.4
(-0.5)
P 		240.1
(-2.9)
P 		234.7
(-3)
P 		349.8
(-0.7)
P 		368.2
(-0.3)
P 		297
avr 447.7
(3) 		418
(2.3) 		188.1
(-3) 		263.8
(-1.3) 		410.7
(2.1) 		367.1
(1.1) 		260
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175598_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19927
Sequence Type Exemplar sequence
Representative Public ID 1927199 NCBI
Target Description g1927199 /REP_DB=GenBank Identifier /GB=U60059.1 /PROTEIN_GB=AAC47518.1 /CHR=5 /FEA=Mapped Transcript /DEF=UNC-76
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074311(10), NM_171553(11), U60058(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_074311 NCBI Caenorhabditis elegans UNCoordinated family member (unc-76) (unc-76) mRNA, complete cds. 10/11 A 
NM_171553 NCBI Caenorhabditis elegans UNCoordinated family member (unc-76) (unc-76) mRNA, complete cds. 11/11 None
U60058 NCBI Caenorhabditis elegans UNC-76 (unc-76) mRNA, major splice form, partial cds. 10/11 A 
C01G10.11a ENSEMBL cdna:known chromosome:CEL140:V:15074342:15082740:1 gene:C01G10.11 10/11 A 
C01G10.11b ENSEMBL cdna:known chromosome:CEL140:V:15074349:15082730:1 gene:C01G10.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15074348-15082730(+) 86.31 100.0
Public Domain and Genome References
Ensembl C01G10.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB02712 Hypothetical protein C01G10.11a [Caenorhabditis elegans] ref|NP_506712.3| UNCoordinated family member (unc-76) [Caenorhabditis elegans] gb|AAA68954.1| UNC-76 0.0
blast AAC47517 UNC-76 0.0
blast CAC70075 Hypothetical protein C01G10.11b [Caenorhabditis elegans] ref|NP_741641.1| UNCoordinated family member (unc-76) [Caenorhabditis elegans] gb|AAC47518.1| UNC-76 0.0
Protein Domains
Database ID Description E-Value
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.610000014305115
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.529999971389771
scop a.2.11.Fe,Mn superoxide dismutase (SOD), N-terminal domain All alpha proteins; Long alpha-hairpin; Fe,Mn superoxide dismutase (SOD), N-terminal domain; Fe,Mn superoxide dismutase (SOD), N-terminal domain 0.46000000834465
Sequence
Target Sequence 
>C. ELEGANS:175598_AT
aaatctgctaactttttgccaaaatttctcaaaaattgaacaaaaagtcattgaaaattg
aaaataaatggtttttttcagttctccgcgcaatccacgatgacaatacgacagtaccca
ccctgctgacagactacattttaacacatgtctgtccaaaaaatatatcgtgttagccat
tgccacccttcgccattccatactagtcattttcccccatctacttgttcttcttcttct
ttctattctacaatttaaaagttttccgttctgtttttgaaaattgtgtgatacagcttt
aaaaaaaaatagtccaaaaaaaatcgtattctctctctccacagctgctttccaaaaaac
ccccttctctttcctttccatgttaattcaaaaagcttcttgactctctgaaaacccaat
gaatgacacaaattctagttgtgcccccctcccaattgcacctgccaacaaaaagtccat
actcaaattctctacaatcccggaatctctctctctctctactgatgatcattaatgttt
ttgcttgtgcttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTGCTAACTTTTTGCCAAAAT 423 117 1991 Antisense
TATATCGTGTTAGCCATTGCCACCC 614 661 2154 Antisense
GCCATTCCATACTAGTCATTTTCCC 617 281 2182 Antisense
AAAAAAATCGTATTCTCTCTCTCCA 193 131 2307 Antisense
CTCTCCACAGCTGCTTTCCAAAAAA 587 231 2325 Antisense
CTCTTTCCTTTCCATGTTAATTCAA 76 231 2357 Antisense
AAGCTTCTTGACTCTCTGAAAACCC 179 149 2383 Antisense
ACACAAATTCTAGTTGTGCCCCCCT 502 111 2416 Antisense
AAGTCCATACTCAAATTCTCTACAA 203 159 2463 Antisense
TTCTCTACAATCCCGGAATCTCTCT 625 691 2478 Antisense
TCATTAATGTTTTTGCTTGTGCTTC 548 619 2519 Antisense
Sequence Source GenBank