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[175595_s_at]

Description g4426592 /REP_DB=GenBank Identifier /GB=AF063023.1 /PROTEIN_GB=AAD20441.1 /CHR=1 /FEA=Mapped Transcript /DEF=AF-6
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 18      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 50      6grp_total > 06      4grp_total > 46      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 570.7
(3)
P 		454.7
(-1.6)
P 		493.4
(-0)
P 		418
(-3)
P 		153
B 633
(3)
P 		475.5
(-1.9)
P 		440.2
(-3)
P 		531.6
(-0.2)
P 		193
C 622.8
(3)
P 		541.6
(0.7)
P 		410.3
(-3)
P 		446.2
(-2)
P 		213
avr 608.8
(3) 		490.6
(-1.4) 		448
(-3) 		465.3
(-2.4) 		161

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 530
1 2 3 4 5 6 range
A 732.7
(2.5)
P 		766.3
(3)
P 		350.2
(-3)
P 		443.3
(-1.7)
P 		502.8
(-0.8)
P 		420.8
(-2)
P 		416
B 770
(3)
P 		561.3
(-0.4)
P 		399.8
(-3)
P 		550.4
(-0.6)
P 		440.6
(-2.3)
P 		435.1
(-2.4)
P 		370
C 819
(3)
P 		548.9
(-0.1)
P 		537.5
(-0.2)
P 		289.5
(-3)
P 		691.4
(1.6)
P 		387.6
(-1.9)
P 		530
avr 773.9
(3) 		625.5
(0.5) 		429.2
(-2.8) 		427.7
(-2.8) 		544.9
(-0.8) 		414.5
(-3) 		359
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 207.8
(3)
P 		98.7
(-1.5)
P 		129
(-0.2)
P 		61.2
(-3)
P 		147
B 201.9
(3)
P 		117.4
(-2.1)
P 		102
(-3)
P 		113.3
(-2.3)
P 		100
C 206.1
(3)
P 		155.7
(0.7)
P 		143
(0.1)
P 		75.2
(-3)
P 		131
avr 205.3
(3) 		123.9
(-1) 		124.7
(-1) 		83.2
(-3) 		122

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 245
1 2 3 4 5 6 range
A 135.1
(-1.2)
P 		272.5
(3)
P 		76.3
(-3)
P 		112.4
(-1.9)
P 		151.7
(-0.7)
P 		102.5
(-2.2)
P 		196
B 267.9
(3)
P 		186.8
(0.2)
P 		97.1
(-3)
P 		145.8
(-1.3)
P 		179
(-0.1)
P 		162.2
(-0.7)
P 		171
C 303.6
(3)
P 		167.5
(-0.3)
P 		136.8
(-1.1)
P 		58.2
(-3)
P 		223.7
(1)
P 		129.7
(-1.3)
P 		245
avr 235.5
(3) 		208.9
(1.8) 		103.4
(-3) 		105.5
(-2.9) 		184.8
(0.7) 		131.5
(-1.7) 		132
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175595_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19629
Sequence Type Exemplar sequence
Representative Public ID 4426592 NCBI
Target Description g4426592 /REP_DB=GenBank Identifier /GB=AF063023.1 /PROTEIN_GB=AAD20441.1 /CHR=1 /FEA=Mapped Transcript /DEF=AF-6
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058537(11), NM_001026488(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058537 NCBI Caenorhabditis elegans W03F11.6a (W03F11.6) mRNA, complete cds. 11/11 A 
NM_001026488 NCBI Caenorhabditis elegans W03F11.6b (W03F11.6) mRNA, complete cds. 11/11 None
GENEFINDER00000024826 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2185758:2209334:1 11/11 None
SNAP00000024821 ENSEMBL cdna:SNAP chromosome:CEL140:I:2199792:2209334:1 11/11 None
W03F11.6a ENSEMBL cdna:known chromosome:CEL140:I:2160044:2209630:1 gene:W03F11.6 11/11 A 
W03F11.6b ENSEMBL cdna:known chromosome:CEL140:I:2197980:2209334:1 gene:W03F11.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
171776 4 2 NM_001026488 175595_s_at (11), 177376_s_at (11)
NM_001026489 176513_s_at (11), 176516_s_at (11), 176647_s_at (11), 177376_s_at (11)
NM_001026490 176513_s_at (11), 176516_s_at (11), 176647_s_at (11)
NM_058537 175595_s_at (11), 176513_s_at (11), 176516_s_at (11), 176647_s_at (11), 177376_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2165975-2209626(+) 99.31 100.0
Public Domain and Genome References
Ensembl W03F11.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK18989 Hypothetical protein W03F11.6a [Caenorhabditis elegans] ref|NP_490938.3| W03F11.6a [Caenorhabditis elegans] 0.0
blast AAD20441 AF-6 [Caenorhabditis elegans] 0.0
blast AAO38588 Hypothetical protein W03F11.6c [Caenorhabditis elegans] ref|NP_001021660.1| W03F11.6c [Caenorhabditis elegans] 0.0
blast AAK18990 Hypothetical protein W03F11.6b [Caenorhabditis elegans] ref|NP_001021659.1| W03F11.6b [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 5.1E-40
Pfam IPR000253 EMBL-EBI Forkhead-associated (FHA) 1.5E-12
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.2E-18
Pfam IPR000159 EMBL-EBI RA domain 5.7E-19
Pfam IPR000159 EMBL-EBI RA domain 4.8E-20
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 2.5E-14
Pfam IPR002710 EMBL-EBI Dilute (DIL) domain 5.1E-40
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 6.1E-6
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.5E-14
Sequence
Target Sequence 
>C. ELEGANS:175595_S_AT
agttgtgcagtatcagacgccgaccagcggagccaatcacgctttctttgatgatgtgcc
ggttttggattcgcctgggatcgtcggcaccaacgaaatctaccgtgatccccgccaacg
tcggctcaacgagctccaagaccgcaatcgcagctcggaaaatggagcggcggacggcgc
gaagctcggcttccgcgacaagcagcgcctattcgcacggcaaatcggcgaggacacggc
accacgccaacgaatgaatgagagcagtgctcagcggctcattgagacggacattgccgc
cacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGTGCAGTATCAGACGCCGACC 265 63 4024 Antisense
GAGCCAATCACGCTTTCTTTGATGA 519 383 4053 Antisense
TGATGTGCCGGTTTTGGATTCGCCT 11 565 4075 Antisense
TCGGCACCAACGAAATCTACCGTGA 499 607 4107 Antisense
TCCAAGACCGCAATCGCAGCTCGGA 328 587 4158 Antisense
AAAATGGAGCGGCGGACGGCGCGAA 498 131 4182 Antisense
GCCTATTCGCACGGCAAATCGGCGA 518 281 4230 Antisense
CGGCAAATCGGCGAGGACACGGCAC 445 241 4241 Antisense
CACGGCACCACGCCAACGAATGAAT 273 199 4258 Antisense
TGAGAGCAGTGCTCAGCGGCTCATT 545 567 4282 Antisense
CATTGAGACGGACATTGCCGCCACC 212 213 4303 Antisense
Sequence Source GenBank