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[175594_at]

Description g1840138 /REP_DB=GenBank Identifier /GB=U86640.1 /PROTEIN_GB=AAB47273.1 /CHR=2 /FEA=Mapped Transcript /DEF=MEL-11
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 39      4grp_highest_8_8 > 43      4grp_high_8_8 > 32      6grp_highest_nonorm > 67      6grp_total > 38      4grp_total > 47      6grp_highest_sub > Cu      6grp_cgc > 04      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 642
1 2 3 4 range
A 1433.4
(0.5)
P 		1171.1
(-3)
P 		1621.8
(3)
P 		1445.7
(0.7)
P 		451
B 1733.8
(3)
P 		1311.1
(-0.9)
P 		1091.5
(-3)
P 		1334.8
(-0.7)
P 		642
C 1603.4
(3)
P 		1377.3
(-0.3)
P 		1341.4
(-0.8)
P 		1191.2
(-3)
P 		412
avr 1590.2
(3) 		1286.5
(-3) 		1351.6
(-1.7) 		1323.9
(-2.3) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1226
1 2 3 4 5 6 range
A 2333.6
(3)
P 		1824.2
(0.2)
P 		1223.5
(-3)
P 		1425.4
(-1.9)
P 		1826.4
(0.3)
P 		2070.7
(1.6)
P 		1110
B 2186.8
(3)
P 		2141.4
(2.7)
P 		1107.8
(-3)
P 		1616.4
(-0.2)
P 		1578.8
(-0.4)
P 		1954.5
(1.7)
P 		1079
C 1999.9
(3)
P 		1892.7
(1.7)
P 		1487.4
(-3)
P 		1574.3
(-2)
P 		1620.5
(-1.4)
P 		1769.3
(0.3)
P 		513
avr 2173.4
(3) 		1952.8
(1.5) 		1272.9
(-3) 		1538.7
(-1.2) 		1675.2
(-0.3) 		1931.5
(1.4) 		901
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 352
1 2 3 4 range
A 521.9
(3)
P 		254.2
(-2.2)
P 		424
(1.1)
P 		211.6
(-3)
P 		310
B 552.9
(3)
P 		323.8
(-1.6)
P 		252.9
(-3)
P 		284.5
(-2.4)
P 		300
C 530.8
(3)
P 		396
(0.5)
P 		467.5
(1.8)
P 		200.9
(-3)
P 		330
avr 535.2
(3) 		324.7
(-1.2) 		381.5
(-0) 		232.3
(-3) 		303

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 495
1 2 3 4 5 6 range
A 430.2
(-0.4)
P 		648.8
(3)
P 		266.4
(-3)
P 		361.5
(-1.5)
P 		551.1
(1.5)
P 		504.1
(0.7)
P 		382
B 760.9
(3)
P 		712.8
(2.4)
P 		269
(-3)
P 		428.1
(-1.1)
P 		641.4
(1.5)
P 		728.8
(2.6)
P 		492
C 741.3
(3)
P 		577.5
(0.7)
P 		378.6
(-2.1)
P 		316.6
(-3)
P 		524.4
(-0.1)
P 		592.3
(0.9)
P 		425
avr 644.1
(3) 		646.4
(3) 		304.7
(-3) 		368.7
(-1.9) 		572.3
(1.7) 		608.4
(2.3) 		342
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175594_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19715
Sequence Type Exemplar sequence
Representative Public ID 1840138 NCBI
Target Description g1840138 /REP_DB=GenBank Identifier /GB=U86640.1 /PROTEIN_GB=AAB47273.1 /CHR=2 /FEA=Mapped Transcript /DEF=MEL-11
Cluster Evidence This cluster is supported by a Mapped Transcript.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063593(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063593 NCBI Caenorhabditis elegans Maternal Effect Lethal family member (mel-11) (mel-11) mRNA, complete cds. 11/11 A 
C06C3.1a ENSEMBL cdna:known chromosome:CEL140:II:9358446:9369000:1 gene:C06C3.1 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000008823 2/11 Cross Hyb Matching Probes None
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174484 4 1 NM_063593 173126_s_at (11), 175594_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9358442-9368996(+) 97.99 100.0
Public Domain and Genome References
Ensembl C06C3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87782 Hypothetical protein C06C3.1a [Caenorhabditis elegans] emb|CAA85318.1| Hypothetical protein C06C3.1a [Caenorhabditis elegans] ref|NP_495994.1| Maternal Effect Lethal family member (mel-11) [Caenorhabditis elegans] gb|AAB47273.1| MEL-11 [Caenorhabditis elegans] 0.0
blast CAD57699 Hypothetical protein C06C3.1b [Caenorhabditis elegans] emb|CAD57685.1| Hypothetical protein C06C3.1b [Caenorhabditis elegans] ref|NP_001021927.1| Maternal Effect Lethal family member (mel-11) [Caenorhabditis elegans] 0.0
blast CAH10845 Hypothetical protein C06C3.1d [Caenorhabditis elegans] emb|CAH04695.1| Hypothetical protein C06C3.1d [Caenorhabditis elegans] ref|NP_001021929.1| Maternal Effect Lethal family member (mel-11) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 0.0061
Pfam IPR002110 EMBL-EBI Ankyrin 2.7E-9
Pfam IPR002110 EMBL-EBI Ankyrin 8.7E-12
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-6
Pfam IPR002110 EMBL-EBI Ankyrin 7.9E-7
Sequence
Target Sequence 
>C. ELEGANS:175594_AT
agatgaccatctagctttatggttttacaaaaaaatttaattatttgaatcattattctg
ttttcctctcacagcccaaatattgcacattttctgtctcgttacctctttctgacacac
acacacttcgcctgcctcttataggaaaatgttatttctttcattctccgtggaattttt
cttcttcctatcatccaattttcgctatttttgaggtttcttactagaaatctaaaaaat
taactttcttctctctctccgggatactgtacacactgatatttctcacattttccctct
tcattctctctccccgcccacgcataacaactacaaaagtgcatacataatatttttttt
cgtctcgtcaccagaaatgtgcaataattgttttttccttcatcgttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGATGACCATCTAGCTTTATGGTTT 626 63 3050 Antisense
CATCTAGCTTTATGGTTTTACAAAA 257 209 3057 Antisense
GAATCATTATTCTGTTTTCCTCTCA 617 327 3096 Antisense
TCATTATTCTGTTTTCCTCTCACAG 658 619 3099 Antisense
TTCCTCTCACAGCCCAAATATTGCA 433 699 3112 Antisense
CTCTCACAGCCCAAATATTGCACAT 227 231 3115 Antisense
TATTGCACATTTTCTGTCTCGTTAC 203 665 3130 Antisense
TTTTTTTCGTCTCGTCACCAGAAAT 91 675 3403 Antisense
TTCGTCTCGTCACCAGAAATGTGCA 565 691 3408 Antisense
GTCTCGTCACCAGAAATGTGCAATA 498 469 3411 Antisense
TAATTGTTTTTTCCTTCATCGTTCA 624 633 3434 Antisense
Sequence Source GenBank