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[175593_at]

Description AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read.
Cluster 6grp_total > 52      4grp_total > 26      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 9.9
(-1.6)
A 		35.1
(3)
A 		3.6
(-2.7)
A 		2
(-3)
A 		33
B 37.3
(-1)
A 		29.2
(-3)
A 		31.2
(-2.5)
A 		53.6
(3)
A 		24
C 28.1
(-3)
A 		31.1
(-2.2)
A 		51.2
(3)
A 		50
(2.7)
A 		23
avr 25.1
(-3) 		31.8
(1) 		28.7
(-0.9) 		35.2
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 28.3
(-1.8)
A 		40.8
(-0)
A 		61.6
(3)
A 		20.3
(-3)
A 		42.6
(0.2)
A 		33.2
(-1.1)
A 		41
B 46
(1.2)
A 		4.6
(-3)
A 		64.1
(3)
A 		53.1
(1.9)
A 		40.8
(0.7)
A 		26.7
(-0.8)
A 		60
C 24.1
(-0.9)
A 		63
(3)
A 		24.3
(-0.9)
A 		47
(1.4)
A 		3.2
(-3)
A 		29.1
(-0.4)
A 		60
avr 32.8
(-1.9) 		36.1
(-1) 		50
(3) 		40.1
(0.2) 		28.9
(-3) 		29.7
(-2.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.6
(-0.3)
A 		7.6
(3)
A 		1
(-2.4)
A 		0.3
(-3)
A 		7
B 11.9
(3)
A 		7.2
(-3)
A 		7.2
(-3)
A 		11.4
(2.4)
A 		5
C 9.3
(-2.4)
A 		8.9
(-2.7)
A 		17.9
(3)
A 		8.4
(-3)
A 		10
avr 8.3
(1.8) 		7.9
(0.6) 		8.7
(3) 		6.7
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 5.2
(-2.9)
A 		14.5
(3)
A 		13.4
(2.3)
A 		5.1
(-3)
A 		12.8
(1.9)
A 		8.1
(-1.1)
A 		9
B 16
(2.8)
A 		1.5
(-3)
A 		15.6
(2.6)
A 		14.1
(2)
A 		16.6
(3)
A 		10
(0.4)
A 		15
C 8.9
(-0.4)
A 		19.2
(3)
A 		6.2
(-1.3)
A 		9.4
(-0.2)
A 		1
(-3)
A 		9.7
(-0.1)
A 		18
avr 10
(-1.3) 		11.7
(3) 		11.7
(3) 		9.5
(-2.5) 		10.1
(-1) 		9.3
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175593_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28245
Sequence Type Exemplar sequence
Representative Public ID AU115873 NCBI
Target Description AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU115873
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU115873 AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076740 11/11 Negative Strand Matching Probes A 
SNAP00000015667 11/11 Negative Strand Matching Probes None
GENEFINDER00000015670 11/11 Negative Strand Matching Probes None
H22K11.4 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6787281-6787615(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175593_AT
tcaattgtatcctctttatcattaagtctactcgcacttttgctaaatctcgcaatacta
gtgcttggagctctacttcttgattgtaaataagaatgaattccagaaggcgcagtggag
ttcgtgtctggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAATTGTATCCTCTTTATCATTAA 674 633 138 Antisense
GTATCCTCTTTATCATTAAGTCTAC 522 455 144 Antisense
CATTAAGTCTACTCGCACTTTTGCT 250 215 157 Antisense
GTCTACTCGCACTTTTGCTAAATCT 548 469 163 Antisense
ACTCGCACTTTTGCTAAATCTCGCA 481 99 167 Antisense
AAATCTCGCAATACTAGTGCTTGGA 150 119 182 Antisense
ACTAGTGCTTGGAGCTCTACTTCTT 611 101 194 Antisense
CTTGGAGCTCTACTTCTTGATTGTA 185 217 201 Antisense
GGAGCTCTACTTCTTGATTGTAAAT 526 519 204 Antisense
AGAATGAATTCCAGAAGGCGCAGTG 397 73 230 Antisense
AGGCGCAGTGGAGTTCGTGTCTGGT 125 55 245 Antisense
Sequence Source Affymetrix Proprietary Database