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[175592_s_at] Acetyltransferase (GNAT) family

Description CE21C8 /REP_DB=TREMBL Accession /GB=M89336 /CHR=5 /FEA=Genomic Cluster /DEF=CEL21C8 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm21c8 5prime, mRNA sequence.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 43      6grp_total > 53      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 669
1 2 3 4 range
A 621.2
(-1.8)
P 		1066.9
(3)
P 		998.2
(2.3)
P 		504.7
(-3)
P 		562
B 794.7
(-0.8)
P 		975.6
(1.1)
P 		1154.2
(3)
P 		592.3
(-3)
P 		562
C 664.5
(-1.7)
P 		1173.8
(3)
P 		1075.5
(2.1)
P 		517.1
(-3)
P 		657
avr 693.5
(-1.3) 		1072.1
(3) 		1076
(3) 		538
(-3) 		538

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1037
1 2 3 4 5 6 range
A 817
(-2.2)
P 		1028.7
(-1)
P 		1715.9
(3)
P 		1119
(-0.5)
P 		678.6
(-3)
P 		922.6
(-1.6)
P 		1037
B 927.5
(-2.5)
P 		1093.1
(-1.1)
P 		1548.8
(3)
P 		907.6
(-2.7)
P 		874.5
(-3)
P 		924.2
(-2.6)
P 		674
C 1036.7
(-0.3)
P 		1275.2
(3)
P 		1066.1
(0.1)
P 		1003.2
(-0.8)
P 		840.6
(-3)
P 		940.6
(-1.6)
P 		435
avr 927.1
(-1.8) 		1132.3
(0.1) 		1443.6
(3) 		1009.9
(-1) 		797.9
(-3) 		929.1
(-1.8) 		646
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 301
1 2 3 4 range
A 226.2
(1.9)
P 		231.6
(2.1)
P 		260.9
(3)
P 		73.9
(-3)
P 		187
B 253.4
(2.4)
P 		240.9
(1.9)
P 		267.5
(3)
P 		126.2
(-3)
P 		141
C 220
(-0.2)
P 		337.5
(2.2)
P 		374.8
(3)
P 		87.2
(-3)
P 		288
avr 233.2
(1) 		270
(2.1) 		301.1
(3) 		95.8
(-3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 239
1 2 3 4 5 6 range
A 150.6
(-3)
P 		365.9
(2.8)
P 		373.7
(3)
P 		283.8
(0.6)
P 		204.8
(-1.5)
P 		224.6
(-1)
P 		223
B 322.7
(0.6)
P 		363.8
(2.5)
P 		376.1
(3)
P 		240.4
(-3)
P 		355.3
(2.1)
P 		344.6
(1.6)
P 		136
C 384.3
(2.8)
P 		389.1
(3)
P 		271.3
(-0.8)
P 		201.7
(-3)
P 		272
(-0.7)
P 		314.9
(0.6)
P 		187
avr 285.9
(-1) 		372.9
(3) 		340.4
(1.5) 		242
(-3) 		277.4
(-1.4) 		294.7
(-0.6) 		131
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175592_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21880
Sequence Type Exemplar sequence
Representative Public ID CE21C8 NCBI
Target Description CE21C8 /REP_DB=TREMBL Accession /GB=M89336 /CHR=5 /FEA=Genomic Cluster /DEF=CEL21C8 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm21c8 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_073430(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_073430 NCBI Caenorhabditis elegans C06H2.3 (C06H2.3) mRNA, complete cds. 11/11 A 
SNAP00000033418 ENSEMBL cdna:SNAP chromosome:CEL140:V:11130085:11132621:1 11/11 None
GENEFINDER00000033428 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:11130085:11132621:1 11/11 None
C06H2.3.2 ENSEMBL cdna:known chromosome:CEL140:V:11130083:11132621:1 gene:C06H2.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:11130510-11130882(+) 100.0 100.0
Public Domain and Genome References
Gene Title Acetyltransferase (GNAT) family
Ensembl C06H2.3
Entrez Gene 179543 Entrez gene
SwissProt Q17765 EMBL-EBI
WormBase CE05235 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:257985_AT transcription factor jumonji (jmjC) domain-containing protein at
CANINE_2:CFAAFFX.26721.1.S1_AT similar to CG13902-PA cfa
CANINE_2:CFAAFFX.26722.1.S1_S_AT similar to CG13902-PA cfa
DROSOPHILA_2:1632198_AT dm
DROSGENOME1:147943_AT dm
CHICKEN:GGAAFFX.21901.1.S1_AT similar to Hypothetical protein FLJ13798 gga
CHICKEN:GGAAFFX.3919.1.S1_S_AT similar to Hypothetical protein FLJ13798 gga
HG-U133_PLUS_2:220070_AT hypothetical protein FLJ13798 hs
HG-U133A:220070_AT hypothetical protein FLJ13798 hs
HG-U133A_2:220070_AT hypothetical protein FLJ13798 hs
U133_X3P:G13376122_3P_AT hypothetical protein FLJ13798 hs
HG-U95D:79326_AT hypothetical protein FLJ13798 hs
U133_X3P:HS.145717.0.A1_3P_AT Hypothetical protein FLJ13798 hs
HG-U133_PLUS_2:237229_AT Hypothetical protein FLJ13798 hs
HG-U133B:237229_AT Hypothetical protein FLJ13798 hs
HG-U95D:80023_AT Hypothetical protein FLJ13798 hs
MOUSE430_2:1451384_AT RIKEN cDNA 3110005O21 gene mm
MOE430A:1451384_AT RIKEN cDNA 3110005O21 gene mm
MOUSE430A_2:1451384_AT RIKEN cDNA 3110005O21 gene mm
MG-U74CV2:165675_AT RIKEN cDNA 3110005O21 gene mm
RG-U34C:RC_AI171363_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
RG-U34C:RC_AI137432_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
RAE230A:1371424_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
RAT230_2:1371424_AT similar to RIKEN cDNA 3110005O21 (predicted) rn
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
8080 N-acetyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA99769 Hypothetical protein C06H2.3 [Caenorhabditis elegans] ref|NP_505831.1| C06H2.3 [Caenorhabditis elegans] 0.0
blast CAE75174 Hypothetical protein CBG23111 [Caenorhabditis briggsae] 0.0
blast NP_084118 hypothetical protein LOC77035 [Mus musculus] gb|AAH24807.1| Hypothetical protein LOC77035 [Mus musculus] dbj|BAB29111.1| unnamed protein product [Mus musculus] 5.0E-63
Protein Domains
Database ID Description E-Value
Pfam IPR003347 EMBL-EBI Transcription factor jumonji, jmjC 6.1E-6
Pfam IPR000182 EMBL-EBI GCN5-related N-acetyltransferase 3.2E-13
Sequence
Target Sequence 
>C. ELEGANS:175592_S_AT
aattctccagtttatgcctatgctcaagtatcagctctgcaagcatatgttaatttagga
ttcacggtactctcaaaagtatggatagaagatggaacatttattccacatcaaacaatc
ttctggggaactccgatttcaattgatactttcctcaagaaccaatcggaaaaggctgat
ccatcctatgaagattacgacgctcgtagtccagcaatgctac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTCCAGTTTATGCCTATGCTC 487 177 14 Antisense
GCCTATGCTCAAGTATCAGCTCTGC 251 281 29 Antisense
GTATCAGCTCTGCAAGCATATGTTA 163 455 41 Antisense
AATTTAGGATTCACGGTACTCTCAA 191 175 65 Antisense
GAACATTTATTCCACATCAAACAAT 164 351 108 Antisense
CAAACAATCTTCTGGGGAACTCCGA 708 169 125 Antisense
GGAACTCCGATTTCAATTGATACTT 451 529 140 Antisense
GATACTTTCCTCAAGAACCAATCGG 575 423 158 Antisense
GGAAAAGGCTGATCCATCCTATGAA 291 529 181 Antisense
ATCCTATGAAGATTACGACGCTCGT 516 37 196 Antisense
GACGCTCGTAGTCCAGCAATGCTAC 147 381 212 Antisense
Sequence Source Affymetrix Proprietary Database