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[175591_s_at]

Description CE14D9 /REP_DB=TREMBL Accession /GB=M89036 /CHR=5 /FEA=Genomic Cluster /DEF=CEL14D9 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm14d9 5prime, mRNA sequence.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 21      6grp_highest_nonorm > 32      6grp_total > 32      4grp_total > 61      6grp_highest_sub > De      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1542
1 2 3 4 range
A 1439
(3)
P 		932.3
(0.8)
P 		1047.4
(1.3)
P 		80.4
(-3)
A 		1359
B 1366.6
(3)
P 		956.8
(1.2)
P 		1185.8
(2.2)
P 		6
(-3)
A 		1361
C 1547.5
(3)
P 		1099.3
(1.2)
P 		973.1
(0.7)
P 		25.1
(-3)
A 		1522
avr 1451
(3) 		996.1
(1.1) 		1068.8
(1.4) 		37.2
(-3) 		1414

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1379
1 2 3 4 5 6 range
A 903.3
(-0.3)
P 		1442.8
(2.6)
P 		1508.5
(3)
P 		1066.7
(0.6)
P 		639.9
(-1.7)
P 		407.5
(-3)
P 		1101
B 1218.7
(2.2)
P 		1158.3
(1.8)
P 		1353.7
(3)
P 		959.5
(0.6)
P 		882.5
(0.1)
P 		378.6
(-3)
P 		975
C 1719.7
(3)
P 		1132.4
(0.4)
P 		1330.7
(1.3)
P 		709.7
(-1.4)
P 		1056.3
(0.1)
P 		340.5
(-3)
P 		1379
avr 1280.6
(2.3) 		1244.5
(2.1) 		1397.6
(3) 		912
(0.1) 		859.6
(-0.2) 		375.5
(-3) 		1022
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 523
1 2 3 4 range
A 523.9
(3)
P 		202.4
(-0.8)
P 		273.8
(0.1)
P 		11.8
(-3)
A 		512
B 435.8
(3)
P 		236.3
(0.2)
P 		274.8
(0.8)
P 		1.3
(-3)
A 		435
C 512.3
(3)
P 		316.1
(0.7)
P 		339.1
(1)
P 		4.2
(-3)
A 		508
avr 490.7
(3) 		251.6
(0) 		295.9
(0.6) 		5.8
(-3) 		485

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 538
1 2 3 4 5 6 range
A 166.5
(-2)
P 		513.1
(3)
P 		328.5
(0.3)
P 		270.5
(-0.5)
P 		193.1
(-1.6)
P 		99.2
(-3)
P 		414
B 424
(3)
P 		385.6
(2.2)
P 		328.7
(1)
P 		254.1
(-0.6)
P 		358.5
(1.6)
P 		141.2
(-3)
P 		283
C 637.4
(3)
P 		345.5
(-0.3)
P 		338.7
(-0.4)
P 		142.7
(-2.7)
P 		341.8
(-0.4)
P 		114
(-3)
P 		523
avr 409.3
(2.9) 		414.7
(3) 		332
(1.3) 		222.4
(-0.9) 		297.8
(0.6) 		118.1
(-3) 		297
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175591_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22010
Sequence Type Exemplar sequence
Representative Public ID CE14D9 NCBI
Target Description CE14D9 /REP_DB=TREMBL Accession /GB=M89036 /CHR=5 /FEA=Genomic Cluster /DEF=CEL14D9 Chris Martin sorted cDNA library Caenorhabditis elegans cDNA clone cm14d9 5prime, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028500(11), NM_001028501(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028500 NCBI Caenorhabditis elegans C24B9.3a (C24B9.3) mRNA, complete cds. 11/11 None
NM_001028501 NCBI Caenorhabditis elegans C24B9.3b (C24B9.3) mRNA, complete cds. 11/11 None
SNAP00000038275 ENSEMBL cdna:SNAP chromosome:CEL140:V:2706868:2716334:-1 11/11 None
GENEFINDER00000038295 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2706856:2711646:-1 11/11 None
C24B9.3a ENSEMBL cdna:known chromosome:CEL140:V:2706588:2711395:-1 gene:C24B9.3 11/11 None
C24B9.3b ENSEMBL cdna:known chromosome:CEL140:V:2706856:2711646:-1 gene:C24B9.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2709696-2711313(-) 100.0 100.0
Public Domain and Genome References
Ensembl C24B9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC19251 Hypothetical protein C24B9.3a [Caenorhabditis elegans] ref|NP_001023671.1| C24B9.3a [Caenorhabditis elegans] 0.0
blast AAQ91906 Hypothetical protein C24B9.3b [Caenorhabditis elegans] ref|NP_001023672.1| C24B9.3b [Caenorhabditis elegans] 0.0
blast CAE62537 Hypothetical protein CBG06646 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.5.Prefoldin All alpha proteins; Long alpha-hairpin; Prefoldin; Prefoldin 1.79999995231628
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.6E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.2E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.6E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.2E-8
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 3.6E-33
Pfam IPR002035 EMBL-EBI von Willebrand factor, type A 9.2E-8
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000038275 7 70-87,100-122,137-159,180-202,229-251,272-293,303-325
Sequence
Target Sequence 
>C. ELEGANS:175591_S_AT
aacgtcgaatccgatatcgtaattgttgtggacgcttcgaatgcttacgatcaggttacc
tttgaacaaatccgcacattccttctgaactttgtttcctcgctcacagtatccccattg
gacagtcaagttgctctgtacgcgtacggaagttcggctcaaacggtcgcctcgttgaac
gatggatcatcgttgggatcgattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AACGTCGAATCCGATATCGTAATTG 687 143 57 Antisense
ATCGTAATTGTTGTGGACGCTTCGA 674 33 72 Antisense
GTTGTGGACGCTTCGAATGCTTACG 226 437 81 Antisense
GAATGCTTACGATCAGGTTACCTTT 118 331 95 Antisense
CAGTATCCCCATTGGACAGTCAAGT 41 207 163 Antisense
CAGTCAAGTTGCTCTGTACGCGTAC 593 207 179 Antisense
TGTACGCGTACGGAAGTTCGGCTCA 146 559 193 Antisense
TACGGAAGTTCGGCTCAAACGGTCG 701 633 201 Antisense
CTCAAACGGTCGCCTCGTTGAACGA 643 223 214 Antisense
GGTCGCCTCGTTGAACGATGGATCA 468 501 221 Antisense
GATGGATCATCGTTGGGATCGATTC 550 407 237 Antisense
Sequence Source Affymetrix Proprietary Database