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[175589_s_at]

Description CE090 /REP_DB=TREMBL Accession /GB=T00090 /CHR=4 /FEA=Genomic Cluster /DEF=wEST00811 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESB49, mRNA sequence.
Cluster 6grp_highest_10_10 > 46      6grp_high1_10_10 > 64      4grp_high_8_8 > 18      6grp_highest_nonorm > 81      6grp_total > 53      4grp_total > 46      6grp_total_sub > Hat      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 215
1 2 3 4 range
A 276.9
(3)
P 		182.5
(-1.3)
P 		146
(-3)
A 		162.5
(-2.2)
M 		131
B 267.7
(3)
P 		171.3
(-0.5)
P 		102.9
(-3)
P 		211.5
(1)
P 		165
C 261.1
(3)
P 		166.5
(0.1)
P 		120.2
(-1.2)
P 		62.1
(-3)
A 		199
avr 268.6
(3) 		173.4
(-0.9) 		123
(-3) 		145.4
(-2.1) 		146

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 200
1 2 3 4 5 6 range
A 220.4
(-3)
P 		255.6
(-1.8)
P 		400.5
(3)
P 		249.8
(-2)
P 		255.9
(-1.8)
P 		223.1
(-2.9)
P 		180
B 305.3
(0.5)
P 		242.7
(-2.3)
P 		361
(3)
P 		302.9
(0.4)
P 		227.3
(-3)
P 		279.8
(-0.6)
P 		134
C 229.8
(-1.2)
P 		226.5
(-1.4)
P 		284.3
(2.2)
P 		280.4
(1.9)
P 		200.5
(-3)
P 		297.4
(3)
P 		97
avr 251.8
(-1.8) 		241.6
(-2.3) 		348.6
(3) 		277.7
(-0.5) 		227.9
(-3) 		266.8
(-1.1) 		121
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 100.8
(3)
P 		39.6
(-1.8)
P 		38.2
(-1.9)
A 		23.8
(-3)
M 		77
B 85.4
(3)
P 		42.3
(-1.2)
P 		23.8
(-3)
P 		45.1
(-0.9)
P 		62
C 86.4
(3)
P 		47.9
(-0)
P 		41.9
(-0.5)
P 		10.5
(-3)
A 		76
avr 90.9
(3) 		43.3
(-1.4) 		34.6
(-2.2) 		26.5
(-3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 40.6
(-3)
P 		90.9
(3)
P 		87.2
(2.6)
P 		63.4
(-0.3)
P 		77.2
(1.4)
P 		54.3
(-1.4)
P 		50
B 106.2
(3)
P 		80.8
(-2.9)
P 		87.7
(-1.3)
P 		80.2
(-3)
P 		92.4
(-0.2)
P 		104.3
(2.6)
P 		26
C 85.2
(1)
P 		69.1
(-1.2)
P 		72.4
(-0.8)
P 		56.4
(-3)
P 		64.9
(-1.8)
P 		99.6
(3)
P 		43
avr 77.3
(0.3) 		80.3
(1.2) 		82.4
(1.9) 		66.7
(-3) 		78.2
(0.6) 		86.1
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175589_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21598
Sequence Type Exemplar sequence
Representative Public ID CE090 NCBI
Target Description CE090 /REP_DB=TREMBL Accession /GB=T00090 /CHR=4 /FEA=Genomic Cluster /DEF=wEST00811 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESB49, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068389(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068389 NCBI Caenorhabditis elegans F41H10.4 (F41H10.4) mRNA, complete cds. 11/11 None
GENEFINDER00000003916 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:5364549:5368711:1 11/11 None
F41H10.4.1 ENSEMBL cdna:known chromosome:CEL140:IV:5364541:5366743:1 gene:F41H10.4 11/11 None
F41H10.4.2 ENSEMBL cdna:known chromosome:CEL140:IV:5364548:5366702:1 gene:F41H10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000003905 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:5366343-5366672(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41H10.4
Entrez Gene 177317 Entrez gene
SwissProt Q20298 EMBL-EBI
WormBase CE27162 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.2677.1.S1_S_AT similar to GRIP1 associated protein 1 isoform 1 cfa
CANINE_2:CFAAFFX.24132.1.S1_S_AT similar to GRIP1 associated protein 1 isoform 1 cfa
CANINE_2:CFAAFFX.24133.1.S1_S_AT similar to GRIP1 associated protein 1 isoform 1 cfa
HG-U133_PLUS_2:225451_AT GRIP1 associated protein 1 hs
HG-U133B:225451_AT GRIP1 associated protein 1 hs
HU35KSUBA:H59682_S_AT GRIP1 associated protein 1 hs
HU35KSUBA:HUM_ALU_AT GRIP1 associated protein 1 hs
HU35KSUBB:HUM_ALU_AT GRIP1 associated protein 1 hs
HU35KSUBC:HUM_ALU_AT GRIP1 associated protein 1 hs
HU35KSUBD:HUM_ALU_AT GRIP1 associated protein 1 hs
HUGENEFL:HUM_ALU_AT GRIP1 associated protein 1 hs
HC-G110:HUM_ALU_AT GRIP1 associated protein 1 hs
HU35KSUBC:RC_AA159323_AT GRIP1 associated protein 1 hs
U133_X3P:HS.109929.0.S1_3P_AT GRIP1 associated protein 1 hs
HG-U95C:53812_AT GRIP1 associated protein 1 hs
HG-U95C:59298_AT GRIP1 associated protein 1 hs
U133_X3P:HS2.376457.1.A1_3P_AT GRIP1 associated protein 1 hs
HG-U133_PLUS_2:1557562_AT GRIP1 associated protein 1 hs
MG-U74BV2:112461_AT GRIP1 associated protein 1 mm
MOE430A:1417315_AT GRIP1 associated protein 1 mm
MOUSE430A_2:1417315_AT GRIP1 associated protein 1 mm
MOUSE430_2:1417315_AT GRIP1 associated protein 1 mm
MOUSE430_2:1447072_AT Premature mRNA for mKIAA1167 protein mm
MOE430B:1447072_AT Premature mRNA for mKIAA1167 protein mm
MU19KSUBA:TC25758_AT Premature mRNA for mKIAA1167 protein mm
RAE230A:1368909_A_AT GRIP1 associated protein 1 rn
RAT230_2:1368909_A_AT GRIP1 associated protein 1 rn
Protein Similarities
Method ID Description E-Value
blast AAK29812 Hypothetical protein F41H10.4 [Caenorhabditis elegans] ref|NP_500790.1| F41H10.4 [Caenorhabditis elegans] 0.0
blast C88690 protein F41H10.4 [imported] - Caenorhabditis elegans 0.0
blast CAE72721 Hypothetical protein CBG19958 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR004353 EMBL-EBI Yeast 73.5kDa hypothetical-related protein 1.0E-45
Pfam IPR004353 EMBL-EBI Yeast 73.5kDa hypothetical-related protein 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000003916 1 1054-1076
Sequence
Target Sequence 
>C. ELEGANS:175589_S_AT
ctgttcaaccgaaacttgaagcgtcattccgaaaactgctcaatacacttggccaagatt
cccgagattcagatgtccgtgaaatgaacaaaaagctgcaaagaatgcttgaagagacac
tttctaaaaatataattcttcagagagacttgcaaactattatggagagaactggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGTTCAACCGAAACTTGAAGCGTC 709 235 14 Antisense
GAAGCGTCATTCCGAAAACTGCTCA 336 343 31 Antisense
GTCATTCCGAAAACTGCTCAATACA 494 467 36 Antisense
AAACTGCTCAATACACTTGGCCAAG 426 127 46 Antisense
ACACTTGGCCAAGATTCCCGAGATT 653 109 58 Antisense
TTGGCCAAGATTCCCGAGATTCAGA 309 709 62 Antisense
GATTCCCGAGATTCAGATGTCCGTG 430 433 70 Antisense
GATTCAGATGTCCGTGAAATGAACA 439 431 79 Antisense
GAATGCTTGAAGAGACACTTTCTAA 343 331 116 Antisense
TCTTCAGAGAGACTTGCAAACTATT 590 615 150 Antisense
GCAAACTATTATGGAGAGAACTGGC 662 317 165 Antisense
Sequence Source Affymetrix Proprietary Database