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[175587_at]

Description CE367 /REP_DB=TREMBL Accession /GB=T00367 /CHR=X /FEA=Genomic Cluster /DEF=wEST01088 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESE58, mRNA sequence.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 10      4grp_high_8_8 > 54      6grp_highest_nonorm > 33      6grp_total > 52      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1165
1 2 3 4 range
A 838
(-1.1)
P 		1356.3
(1.9)
P 		1545
(3)
P 		521.8
(-3)
P 		1023
B 626.2
(-3)
P 		1321.6
(1)
P 		1686.3
(3)
P 		617.8
(-3)
P 		1069
C 746.2
(-2.4)
P 		1336.3
(1.1)
P 		1657.7
(3)
P 		650.1
(-3)
P 		1008
avr 736.8
(-2.2) 		1338.1
(1.3) 		1629.7
(3) 		596.6
(-3) 		1033

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3016
1 2 3 4 5 6 range
A 1657.6
(-0.7)
P 		2172.1
(0.8)
P 		2994.5
(3)
P 		1615.4
(-0.8)
P 		1342.6
(-1.5)
P 		797.9
(-3)
P 		2197
B 1401.9
(-1.7)
P 		2070.3
(-0)
P 		3311.7
(3)
P 		2055.2
(-0.1)
P 		1178.8
(-2.2)
P 		849.5
(-3)
P 		2462
C 1432.9
(-1.4)
P 		1757.6
(-0.7)
P 		3620.6
(3)
P 		1526.8
(-1.2)
P 		1460
(-1.3)
P 		604.7
(-3)
P 		3016
avr 1497.5
(-1.2) 		2000
(-0.1) 		3308.9
(3) 		1732.5
(-0.7) 		1327.1
(-1.6) 		750.7
(-3) 		2558
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 501
1 2 3 4 range
A 305.1
(1.2)
P 		294.4
(1)
P 		403.9
(3)
P 		76.4
(-3)
P 		328
B 199.7
(-1.4)
P 		326.4
(1.5)
P 		390.8
(3)
P 		131.6
(-3)
P 		259
C 247
(-1.2)
P 		384.2
(0.5)
P 		577.8
(3)
P 		109.6
(-3)
P 		468
avr 250.6
(-0.5) 		335
(0.9) 		457.5
(3) 		105.9
(-3) 		352

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 727
1 2 3 4 5 6 range
A 305.6
(-1.8)
P 		772.5
(3)
P 		652.1
(1.8)
P 		409.7
(-0.8)
P 		405.1
(-0.8)
P 		194.3
(-3)
P 		578
B 487.8
(-0.9)
P 		689.1
(1.6)
P 		804.2
(3)
P 		544.4
(-0.2)
P 		478.9
(-1)
P 		316.8
(-3)
P 		487
C 531.1
(-0.3)
P 		536.3
(-0.2)
P 		921.5
(3)
P 		307
(-2.1)
P 		472.4
(-0.7)
P 		202.4
(-3)
P 		719
avr 441.5
(-0.8) 		666
(1.6) 		792.6
(3) 		420.4
(-1) 		452.1
(-0.7) 		237.8
(-3) 		555
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175587_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22393
Sequence Type Exemplar sequence
Representative Public ID CE367 NCBI
Target Description CE367 /REP_DB=TREMBL Accession /GB=T00367 /CHR=X /FEA=Genomic Cluster /DEF=wEST01088 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESE58, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075879
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
D1005.1 ENSEMBL cdna:known chromosome:CEL140:X:1479537:1484393:1 gene:D1005.1 9/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1483985-1484425(+) 100.0 100.0
Public Domain and Genome References
Ensembl D1005.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB00585 Hypothetical protein D1005.1 [Caenorhabditis elegans] ref|NP_508280.1| D1005.1 [Caenorhabditis elegans] sp|P53585|ACLY_CAEEL Probable ATP-citrate synthase (ATP-citrate (pro-S-)-lyase) (Citrate cleavage enzyme) 0.0
blast CAE56725 Hypothetical protein CBG24512 [Caenorhabditis briggsae] 0.0
blast CAB02690 Hypothetical protein B0365.1 [Caenorhabditis elegans] ref|NP_506267.1| B0365.1 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003781 EMBL-EBI CoA-binding domain 1.4E-31
Pfam IPR005811 EMBL-EBI ATP-citrate lyase/succinyl-CoA ligase 4.5E-77
Sequence
Target Sequence 
>C. ELEGANS:175587_AT
gagcaacttgtaaattccgcaacccttcaacattctcctggaccaagcaactgaagcatt
ccaattttttctaatcactgtaccctaaaagtcccctatctccccccaaccaagcaataa
tttcacaaggttttttttctcaacttgttcattaatttatttcccgtactctactctcaa
ctttaatattgcaccccatgagctttactttttag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCAACTTGTAAATTCCGCAACCC 635 387 88 Antisense
TTGTAAATTCCGCAACCCTTCAACA 250 649 95 Antisense
TTCAACATTCTCCTGGACCAAGCAA 563 685 113 Antisense
GACCAAGCAACTGAAGCATTCCAAT 707 383 128 Antisense
CAATTTTTTCTAATCACTGTACCCT 90 181 149 Antisense
TCCCCCCAACCAAGCAATAATTTCA 190 597 188 Antisense
TTTTTTTCTCAACTTGTTCATTAAT 338 675 219 Antisense
TCATTAATTTATTTCCCGTACTCTA 419 617 236 Antisense
TACTCTACTCTCAACTTTAATATTG 56 647 254 Antisense
TAATATTGCACCCCATGAGCTTTAC 427 633 271 Antisense
GCACCCCATGAGCTTTACTTTTTAG 549 315 278 Antisense
Sequence Source Affymetrix Proprietary Database