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[175586_at]

Description CE101 /REP_DB=TREMBL Accession /GB=T00101 /CHR=4 /FEA=Genomic Cluster /DEF=wEST00822 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESB61, mRNA sequence.
Cluster 6grp_highest_10_10 > 39      6grp_high1_10_10 > 92      4grp_highest_8_8 > 16      4grp_high_8_8 > 52      6grp_highest_nonorm > 65      6grp_total > 94      4grp_total > 59      6grp_highest_sub > 04      6grp_cgc > 77      6grp_high1_sub > 04_05      6grp_cgc_sub > 04_05_06      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 666
1 2 3 4 range
A 723.4
(0)
P 		757.1
(0.3)
P 		1051.7
(3)
P 		385.6
(-3)
P 		666
B 671.9
(-0.2)
P 		980
(3)
P 		588.7
(-1)
P 		393.7
(-3)
P 		586
C 802.9
(1.6)
P 		833.9
(2)
P 		912.9
(3)
P 		433.4
(-3)
P 		480
avr 732.7
(1.4) 		857
(3) 		851.1
(2.9) 		404.2
(-3) 		453

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 926
1 2 3 4 5 6 range
A 679.7
(-3)
P 		742.3
(-2.5)
P 		1078.1
(0)
P 		774.9
(-2.3)
P 		1467.4
(3)
P 		951.6
(-0.9)
P 		788
B 1234.4
(0.2)
P 		814.5
(-2.9)
P 		803.2
(-3)
P 		1420.2
(1.6)
P 		1477.1
(2)
P 		1605.4
(3)
P 		802
C 690.2
(-3)
P 		1117.7
(0.5)
P 		972.9
(-0.7)
P 		1431.6
(3)
P 		982
(-0.6)
P 		882.4
(-1.4)
P 		741
avr 868.1
(-3) 		891.5
(-2.7) 		951.4
(-1.9) 		1208.9
(1.6) 		1308.8
(3) 		1146.5
(0.8) 		441
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 262
1 2 3 4 range
A 263.4
(2.7)
P 		164.3
(-0)
P 		274.9
(3)
P 		56.4
(-3)
P 		219
B 214.3
(1.9)
P 		242
(3)
P 		136.4
(-1)
P 		83.9
(-3)
P 		158
C 265.8
(1.7)
P 		239.8
(1.1)
P 		318.2
(3)
P 		73.1
(-3)
P 		245
avr 247.8
(3) 		215.4
(1.9) 		243.2
(2.8) 		71.1
(-3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 475
1 2 3 4 5 6 range
A 125.3
(-3)
P 		264
(-0.4)
P 		234.8
(-0.9)
P 		196.5
(-1.7)
P 		442.8
(3)
P 		231.7
(-1)
P 		318
B 429.5
(0.5)
P 		271.1
(-1.9)
P 		195
(-3)
P 		376.2
(-0.3)
P 		600.1
(3)
P 		598.6
(3)
P 		405
C 255.8
(-2.5)
P 		341
(3)
P 		247.6
(-3)
P 		287.9
(-0.4)
P 		317.8
(1.5)
P 		295.4
(0.1)
P 		93
avr 270.2
(-1.8) 		292
(-1.3) 		225.8
(-3) 		286.9
(-1.4) 		453.6
(3) 		375.2
(0.9) 		228
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175586_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21465
Sequence Type Exemplar sequence
Representative Public ID CE101 NCBI
Target Description CE101 /REP_DB=TREMBL Accession /GB=T00101 /CHR=4 /FEA=Genomic Cluster /DEF=wEST00822 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESB61, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070005 NCBI Caenorhabditis elegans Heat Shock factor Binding protein family member (hsb-1) (hsb-1) mRNA, complete cds. 11/11 None
K08E7.2 ENSEMBL cdna:known chromosome:CEL140:IV:12565207:12567183:-1 gene:K08E7.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12566090-12566370(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol hsb-1
Ensembl K08E7.2
Entrez Gene 178208 Entrez gene
SwissProt Q9U3B7 EMBL-EBI
WormBase CE23864 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01233 Hypothetical protein K08E7.2 [Caenorhabditis elegans] ref|NP_502406.1| Heat Shock factor Binding protein family member (hsb-1) [Caenorhabditis elegans] 1.0E-29
blast CAE67912 Hypothetical protein CBG13509 [Caenorhabditis briggsae] 1.0E-17
Protein Domains
Database ID Description E-Value
Pfam IPR009643 EMBL-EBI Heat shock factor binding 1 3.8E-30
Sequence
Target Sequence 
>C. ELEGANS:175586_AT
tcatcataattccaattcgttttgtgtgcttctctgcgtctctcctacatacatatactc
ttttcacgtcttcttcttcttctttttctactgattatgcacgtgttgagaggattcatg
actactatgttgtgcctcctgcttttaatctcttattcaataacttttgttgcattttat
tacgattttcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATCATAATTCCAATTCGTTTTGT 529 619 24 Antisense
TCCAATTCGTTTTGTGTGCTTCTCT 256 587 34 Antisense
GTCTCTCCTACATACATATACTCTT 655 469 61 Antisense
TACATATACTCTTTTCACGTCTTCT 229 645 73 Antisense
TCTTCTTTTTCTACTGATTATGCAC 433 617 101 Antisense
GATTATGCACGTGTTGAGAGGATTC 633 429 116 Antisense
GTGTTGAGAGGATTCATGACTACTA 37 485 126 Antisense
CATGACTACTATGTTGTGCCTCCTG 288 211 140 Antisense
CTCCTGCTTTTAATCTCTTATTCAA 475 235 159 Antisense
AATCTCTTATTCAATAACTTTTGTT 234 169 170 Antisense
GTTGCATTTTATTACGATTTTCGGA 126 439 192 Antisense
Sequence Source Affymetrix Proprietary Database