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[175585_at]

Description CE508 /REP_DB=TREMBL Accession /GB=T00508 /CHR=1 /FEA=Genomic Cluster /DEF=wEST01229 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESG18, mRNA sequence.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 31      4grp_high_8_8 > 12      6grp_highest_nonorm > 41      6grp_total > 09      4grp_total > 12      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 624
1 2 3 4 range
A 767.4
(-0.6)
P 		577.3
(-3)
P 		759.3
(-0.7)
P 		1048
(3)
P 		471
B 720.6
(-0.6)
P 		862.8
(0.8)
P 		467.4
(-3)
P 		1091.8
(3)
P 		624
C 954
(1.5)
P 		853
(-3)
P 		954.4
(1.5)
P 		989.1
(3)
P 		136
avr 814
(-1.3) 		764.4
(-2.3) 		727
(-3) 		1043
(3) 		316

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 709
1 2 3 4 5 6 range
A 1119.8
(3)
P 		715.1
(-2)
P 		634.4
(-3)
P 		952.9
(0.9)
P 		739.1
(-1.7)
P 		782.7
(-1.2)
P 		485
B 982.9
(3)
P 		791.2
(0.8)
P 		464.5
(-3)
P 		944.6
(2.6)
P 		608.4
(-1.3)
P 		606.9
(-1.4)
P 		518
C 904.6
(3)
P 		895.2
(2.9)
P 		411.3
(-3)
P 		665.7
(0.1)
P 		498.8
(-1.9)
P 		647.3
(-0.1)
P 		493
avr 1002.4
(3) 		800.5
(0.6) 		503.4
(-3) 		854.4
(1.2) 		615.4
(-1.7) 		679
(-0.9) 		499
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 224
1 2 3 4 range
A 279.4
(3)
P 		125.3
(-3)
P 		198.5
(-0.1)
P 		153.4
(-1.9)
P 		154
B 229.8
(2.9)
P 		213.1
(2.1)
P 		108.3
(-3)
P 		232.7
(3)
P 		124
C 315.8
(2.4)
P 		245.2
(-0.2)
P 		332.6
(3)
P 		166.8
(-3)
P 		166
avr 275
(3) 		194.5
(-2.3) 		213.1
(-1.1) 		184.3
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 237
1 2 3 4 5 6 range
A 206.4
(0.5)
P 		254.3
(3)
P 		138.2
(-3)
P 		241.7
(2.3)
P 		223
(1.4)
P 		190.6
(-0.3)
P 		116
B 342
(3)
P 		263.4
(0.9)
P 		112.8
(-3)
P 		250.2
(0.6)
P 		247.2
(0.5)
P 		226.3
(-0)
P 		229
C 335.3
(3)
P 		273.1
(1.4)
P 		104.7
(-3)
P 		133.9
(-2.2)
P 		161.4
(-1.5)
P 		216.7
(-0.1)
P 		231
avr 294.6
(3) 		263.6
(1.9) 		118.6
(-3) 		208.6
(0.1) 		210.5
(0.1) 		211.2
(0.2) 		176
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175585_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20281
Sequence Type Exemplar sequence
Representative Public ID CE508 NCBI
Target Description CE508 /REP_DB=TREMBL Accession /GB=T00508 /CHR=1 /FEA=Genomic Cluster /DEF=wEST01229 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESG18, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025825(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025825 NCBI Caenorhabditis elegans abnormal cell LINeage family member (lin-10) (lin-10) mRNA, complete cds. 11/11 None
C09H6.2b ENSEMBL cdna:known chromosome:CEL140:I:8117872:8127440:-1 gene:C09H6.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172597 2 1 NM_001025825 175585_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:8117821-8118165(-) 95.64 100.0
Public Domain and Genome References
Ensembl C09H6.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42256 Hypothetical protein C09H6.2b [Caenorhabditis elegans] emb|CAB40208.1| lin-10 protein [Caenorhabditis elegans] ref|NP_001020996.1| abnormal cell LINeage family member (lin-10) [Caenorhabditis elegans] 0.0
blast CAB03869 Hypothetical protein C09H6.2a [Caenorhabditis elegans] ref|NP_492226.2| abnormal cell LINeage family member (lin-10) [Caenorhabditis elegans] sp|O17583|LIN10_CAEEL Abnormal cell lineage protein 10 (Protein lin-10) 0.0
blast CAE66541 Hypothetical protein CBG11848 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.1E-15
Pfam IPR001478 EMBL-EBI PDZ/DHR/GLGF domain 1.1E-20
Pfam IPR006020 EMBL-EBI Phosphotyrosine interaction domain 5.6E-59
Sequence
Target Sequence 
>C. ELEGANS:175585_AT
tgaaaatccacaaggtttccttccaacaatcctcttcaaatccatttcatttcattgatt
tttctgtgataatcacgtttttcttcttccttcgacttttcccccagaaagtgcgcccta
atgtgaattttaaaagttatcattaaagcgcacaaactttcatacgaaatttgaaatgtt
taggtgattctttgcgagtcaaaaaactttttgccattctttcttcatgtttttcctcaa
tttttgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAAAATCCACAAGGTTTCCTTCCA 444 571 46 Antisense
CACAAGGTTTCCTTCCAACAATCCT 553 189 54 Antisense
TGATAATCACGTTTTTCTTCTTCCT 141 565 112 Antisense
CCCAGAAAGTGCGCCCTAATGTGAA 4 259 148 Antisense
AGTGCGCCCTAATGTGAATTTTAAA 603 55 155 Antisense
AAAAGTTATCATTAAAGCGCACAAA 544 129 177 Antisense
AAGCGCACAAACTTTCATACGAAAT 569 149 191 Antisense
ATGTTTAGGTGATTCTTTGCGAGTC 682 47 221 Antisense
TTTTTGCCATTCTTTCTTCATGTTT 350 675 253 Antisense
TGCCATTCTTTCTTCATGTTTTTCC 84 587 257 Antisense
TTCATGTTTTTCCTCAATTTTTGTG 256 689 269 Antisense
Sequence Source Affymetrix Proprietary Database