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[175584_s_at]

Description CE4291 /REP_DB=TREMBL Accession /GB=T01429 /CHR=2 /FEA=Genomic Cluster /DEF=wEST02150 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESQ76, mRNA sequence.
Cluster 6grp_highest_10_10 > 67      6grp_high1_10_10 > 76      4grp_high_8_8 > 52      6grp_highest_nonorm > 91      6grp_total > 66      4grp_total > 51      6grp_highest_sub > In      6grp_high1_sub > Da      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 115.6
(-1.1)
P 		170.3
(3)
P 		123.3
(-0.5)
P 		89.3
(-3)
A 		81
B 92.2
(0.3)
P 		137
(2.6)
P 		143.8
(3)
P 		29.1
(-3)
P 		115
C 130.3
(1.2)
P 		153.3
(3)
P 		152.6
(2.9)
P 		75.5
(-3)
P 		78
avr 112.7
(0.2) 		153.5
(3) 		139.9
(2.1) 		64.6
(-3) 		89

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 273
1 2 3 4 5 6 range
A 133.2
(-3)
P 		153.3
(-2.1)
P 		219.2
(0.8)
P 		214.9
(0.6)
P 		144
(-2.5)
P 		268.9
(3)
P 		136
B 131.4
(-2.8)
P 		221.4
(0.4)
P 		181.9
(-1)
P 		126.8
(-3)
P 		188.5
(-0.8)
P 		295.7
(3)
P 		169
C 142.5
(-3)
P 		241.6
(-0.7)
P 		177
(-2.2)
P 		222.2
(-1.1)
P 		179.9
(-2.1)
P 		399.3
(3)
P 		257
avr 135.7
(-3) 		205.4
(-0.7) 		192.7
(-1.2) 		188
(-1.3) 		170.8
(-1.9) 		321.3
(3) 		186
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 42.1
(3)
P 		37
(1.9)
P 		32.2
(1)
P 		13.1
(-3)
A 		29
B 29.4
(2)
P 		33.8
(3)
P 		33.3
(2.9)
P 		6.2
(-3)
P 		28
C 43.1
(1.5)
P 		44.1
(1.7)
P 		53.2
(3)
P 		12.7
(-3)
P 		41
avr 38.2
(2.7) 		38.3
(2.7) 		39.6
(3) 		10.7
(-3) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 109
1 2 3 4 5 6 range
A 24.5
(-3)
P 		54.5
(1.4)
P 		47.7
(0.4)
P 		54.5
(1.4)
P 		43.5
(-0.2)
P 		65.5
(3)
P 		41
B 45.7
(-2.1)
P 		73.7
(0.1)
P 		44.2
(-2.2)
P 		33.6
(-3)
P 		76.6
(0.4)
P 		110.3
(3)
P 		77
C 52.8
(-2.5)
P 		73.7
(-1)
P 		45.1
(-3)
P 		44.7
(-3)
P 		58.2
(-2.1)
P 		133.7
(3)
P 		89
avr 41
(-3) 		67.3
(-0.5) 		45.7
(-2.5) 		44.3
(-2.7) 		59.4
(-1.2) 		103.2
(3) 		62
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175584_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20738
Sequence Type Exemplar sequence
Representative Public ID CE4291 NCBI
Target Description CE4291 /REP_DB=TREMBL Accession /GB=T01429 /CHR=2 /FEA=Genomic Cluster /DEF=wEST02150 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESQ76, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062740(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062740 NCBI Caenorhabditis elegans K05F1.5 (K05F1.5) mRNA, complete cds. 11/11 A 
SNAP00000031242 ENSEMBL cdna:SNAP chromosome:CEL140:II:5792728:5794240:1 11/11 None
GENEFINDER00000031251 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5790702:5794240:1 11/11 None
K05F1.5 ENSEMBL cdna:known chromosome:CEL140:II:5789137:5794357:1 gene:K05F1.5 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5793761-5794276(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K05F1.5
Entrez Gene 173978 Entrez gene
SwissProt Q21241 EMBL-EBI
WormBase CE28587 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA68720 Hypothetical protein K05F1.5 [Caenorhabditis elegans] ref|NP_495141.1| K05F1.5 [Caenorhabditis elegans] 0.0
blast CAE59189 Hypothetical protein CBG02500 [Caenorhabditis briggsae] 0.0
blast CAE59189 Hypothetical protein CBG02500 [Caenorhabditis briggsae] 1.0E-173
blast AAA68720 Hypothetical protein K05F1.5 [Caenorhabditis elegans] ref|NP_495141.1| K05F1.5 [Caenorhabditis elegans] 1.0E-170
blast CAE59189 Hypothetical protein CBG02500 [Caenorhabditis briggsae] 1.0E-158
blast T16567 hypothetical protein K05F1.4 - Caenorhabditis elegans 1.0E-150
Protein Domains
Database ID Description E-Value
Pfam IPR008663 EMBL-EBI Leukocyte cell-derived chemotaxin 2 7.8E-120
Pfam IPR008663 EMBL-EBI Leukocyte cell-derived chemotaxin 2 8.1E-81
Pfam IPR008663 EMBL-EBI Leukocyte cell-derived chemotaxin 2 2.8E-29
Pfam IPR008663 EMBL-EBI Leukocyte cell-derived chemotaxin 2 9.3E-80
Sequence
Target Sequence 
>C. ELEGANS:175584_S_AT
ggaattgatgattggctcggatttgaggcaaggctgtacaatgtgaaggctcgagcagac
atcggatttggaagaaaacgaattattcaaggagagccgattgcaactcggctggcatgt
gaaaatagtccggacagtgtgtttgtagagattcgcttcgaaggccgagtagtcaatatt
actga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAATTGATGATTGGCTCGGATTTG 627 533 20 Antisense
GGCTCGGATTTGAGGCAAGGCTGTA 649 513 33 Antisense
GCAAGGCTGTACAATGTGAAGGCTC 501 321 47 Antisense
GTGAAGGCTCGAGCAGACATCGGAT 234 481 62 Antisense
GGCTCGAGCAGACATCGGATTTGGA 269 539 67 Antisense
AACGAATTATTCAAGGAGAGCCGAT 560 143 96 Antisense
GAGAGCCGATTGCAACTCGGCTGGC 136 395 111 Antisense
GATTGCAACTCGGCTGGCATGTGAA 127 435 118 Antisense
GCTGGCATGTGAAAATAGTCCGGAC 565 293 130 Antisense
ATTCGCTTCGAAGGCCGAGTAGTCA 184 7 170 Antisense
AAGGCCGAGTAGTCAATATTACTGA 41 161 180 Antisense
Sequence Source Affymetrix Proprietary Database