[Home] | [Total List]

[175583_s_at]

Description CE4402 /REP_DB=TREMBL Accession /GB=T02440 /CHR=4 /FEA=Genomic Cluster /DEF=wEST03161 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CESAD90, mRNA sequence.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 74      6grp_total > 45      4grp_total > 38      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 444
1 2 3 4 range
A 988.4
(3)
P 		774.3
(-0.1)
P 		574.4
(-3)
P 		742.6
(-0.6)
P 		414
B 980.4
(3)
P 		624
(-2.5)
P 		594.4
(-3)
P 		756.2
(-0.5)
P 		386
C 984.2
(3)
P 		600.3
(-2.2)
P 		544.7
(-3)
P 		727.3
(-0.5)
P 		440
avr 984.3
(3) 		666.2
(-1.6) 		571.2
(-3) 		742
(-0.5) 		413

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 366
1 2 3 4 5 6 range
A 878.7
(3)
P 		761
(0.9)
P 		618.9
(-1.6)
P 		537.8
(-3)
P 		539.9
(-3)
P 		695.4
(-0.2)
P 		341
B 815.1
(3)
P 		730.5
(1.2)
P 		745.3
(1.5)
P 		604.6
(-1.5)
P 		532.9
(-3)
P 		772
(2.1)
P 		282
C 661.3
(0.5)
P 		669.1
(0.7)
P 		733.8
(2.2)
P 		544.5
(-2.3)
P 		513.2
(-3)
P 		765.9
(3)
P 		253
avr 785
(3) 		720.2
(1.5) 		699.3
(1) 		562.3
(-2.2) 		528.7
(-3) 		744.4
(2) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 359.9
(3)
P 		168.1
(-1.6)
P 		150.2
(-2)
P 		108.7
(-3)
P 		251
B 312.6
(3)
P 		154.1
(-2.4)
P 		137.7
(-3)
P 		161.2
(-2.2)
P 		175
C 325.8
(3)
P 		172.6
(-1.5)
P 		189.9
(-1)
P 		122.6
(-3)
P 		203
avr 332.8
(3) 		164.9
(-2) 		159.3
(-2.2) 		130.8
(-3) 		202

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 178
1 2 3 4 5 6 range
A 162
(-1.8)
P 		270.6
(3)
P 		134.8
(-3)
P 		136.4
(-2.9)
P 		162.9
(-1.8)
P 		169.3
(-1.5)
P 		136
B 283.6
(2.8)
P 		243.1
(0.9)
P 		181
(-2)
P 		160.1
(-3)
P 		216.5
(-0.4)
P 		287.9
(3)
P 		128
C 245.1
(2.5)
P 		204.2
(0.9)
P 		186.8
(0.2)
P 		109.5
(-3)
P 		166.1
(-0.7)
P 		256.4
(3)
P 		147
avr 230.2
(2.5) 		239.3
(3) 		167.5
(-1.1) 		135.3
(-3) 		181.8
(-0.3) 		237.9
(2.9) 		104
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175583_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21390
Sequence Type Exemplar sequence
Representative Public ID CE4402 NCBI
Target Description CE4402 /REP_DB=TREMBL Accession /GB=T02440 /CHR=4 /FEA=Genomic Cluster /DEF=wEST03161 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CESAD90, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069905(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069905 NCBI Caenorhabditis elegans B0001.5 (B0001.5) mRNA, complete cds. 11/11 None
SNAP00000035711 ENSEMBL cdna:SNAP chromosome:CEL140:IV:12138993:12143296:-1 11/11 None
GENEFINDER00000035720 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:12138993:12150935:-1 11/11 None
B0001.5 ENSEMBL cdna:known chromosome:CEL140:IV:12141133:12143302:-1 gene:B0001.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:12141213-12141547(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0001.5
Entrez Gene 178162 Entrez gene
SwissProt Q17414 EMBL-EBI
WormBase CE29524 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93454 Hypothetical protein B0001.5 [Caenorhabditis elegans] ref|NP_502306.1| B0001.5 [Caenorhabditis elegans] 0.0
blast CAD01081 Hypothetical protein B0001.8 [Caenorhabditis elegans] ref|NP_502305.2| B0001.8 [Caenorhabditis elegans] 0.0
blast CAA93451 Hypothetical protein B0001.2 [Caenorhabditis elegans] ref|NP_502308.2| B0001.2 [Caenorhabditis elegans] 0.0
blast CAA93452 Hypothetical protein B0001.3 [Caenorhabditis elegans] ref|NP_502307.1| B0001.3 [Caenorhabditis elegans] 0.0
blast CAE62191 Hypothetical protein CBG06239 [Caenorhabditis briggsae] 4.0E-35
blast CAD01081 Hypothetical protein B0001.8 [Caenorhabditis elegans] ref|NP_502305.2| B0001.8 [Caenorhabditis elegans] 3.0E-21
Protein Domains
Database ID Description E-Value
Pfam IPR004987 EMBL-EBI Protein of unknown function DUF272 5.0E-70
Sequence
Target Sequence 
>C. ELEGANS:175583_S_AT
aagttgaagacgaagctgtcccgaatatgcaagctgtcactgtcgttcactgcaaatgat
tccgtttcaactccaatgcaactacattctctcgaagaatacgaggaactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGTTGAAGACGAAGCTGTCCCGAA 525 153 42 Antisense
GACGAAGCTGTCCCGAATATGCAAG 270 379 50 Antisense
CTGTCCCGAATATGCAAGCTGTCAC 554 239 57 Antisense
GAATATGCAAGCTGTCACTGTCGTT 546 325 64 Antisense
ATATGCAAGCTGTCACTGTCGTTCA 584 21 66 Antisense
TGTCACTGTCGTTCACTGCAAATGA 416 559 76 Antisense
TTCACTGCAAATGATTCCGTTTCAA 277 687 87 Antisense
AAATGATTCCGTTTCAACTCCAATG 208 119 95 Antisense
AACTCCAATGCAACTACATTCTCTC 473 141 110 Antisense
CTCCAATGCAACTACATTCTCTCGA 225 237 112 Antisense
TTCTCTCGAAGAATACGAGGAACTC 560 669 128 Antisense
Sequence Source Affymetrix Proprietary Database