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[175581_at]

Description BF176649 /REP_DB=TREMBL Accession /GB=BF176649 /CHR=2 /FEA=Genomic Cluster /DEF=EST31 Rare cDNA library from Caenorhabditis elegans adults Caenorhabditis elegans cDNA, mRNA sequence.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 06      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 70      6grp_total > 06      4grp_total > 29      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 386
1 2 3 4 range
A 547.8
(3)
P 		256.7
(-1.6)
P 		168
(-3)
P 		421.2
(1)
P 		380
B 283
(0.2)
P 		302.9
(0.8)
P 		174.2
(-3)
P 		376.1
(3)
P 		202
C 554.4
(3)
P 		418.4
(0.7)
P 		200.2
(-3)
P 		397.5
(0.3)
P 		354
avr 461.7
(3) 		326
(0.1) 		180.8
(-3) 		398.3
(1.6) 		281

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 363
1 2 3 4 5 6 range
A 412
(2.5)
P 		249.1
(-1.3)
P 		434.2
(3)
P 		175.2
(-3)
P 		248.8
(-1.3)
P 		250.5
(-1.3)
P 		259
B 538.5
(3)
P 		370.8
(-0.2)
P 		256.2
(-2.4)
P 		277
(-2)
P 		222.2
(-3)
P 		222.7
(-3)
P 		316
C 477.4
(3)
P 		322.1
(-0.4)
P 		253.1
(-2)
P 		232.6
(-2.4)
P 		328.9
(-0.3)
P 		206.3
(-3)
P 		271
avr 476
(3) 		314
(-0.9) 		314.5
(-0.9) 		228.3
(-3) 		266.6
(-2) 		226.5
(-3) 		250
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 159
1 2 3 4 range
A 199.4
(3)
P 		55.7
(-2.5)
P 		43.9
(-3)
P 		61.7
(-2.3)
P 		156
B 90.2
(3)
P 		74.8
(1.1)
P 		40.4
(-3)
P 		80.1
(1.8)
P 		50
C 183.5
(3)
P 		120.3
(-0.3)
P 		69.8
(-2.9)
P 		67
(-3)
P 		117
avr 157.7
(3) 		83.6
(-1.2) 		51.4
(-3) 		69.6
(-2) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 76
(0.8)
P 		88.6
(2.3)
P 		94.6
(3)
P 		44.4
(-3)
P 		75.1
(0.7)
P 		61
(-1)
P 		50
B 187.4
(3)
P 		123.4
(-0.1)
P 		62.2
(-3)
P 		73.4
(-2.5)
P 		90.3
(-1.7)
P 		83
(-2)
P 		125
C 177
(3)
P 		98.3
(-0.6)
P 		64.4
(-2.2)
P 		46.8
(-3)
P 		106.4
(-0.3)
P 		69.1
(-2)
P 		130
avr 146.8
(3) 		103.4
(0.2) 		73.7
(-1.8) 		54.9
(-3) 		90.6
(-0.7) 		71
(-1.9) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175581_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20689
Sequence Type Exemplar sequence
Representative Public ID BF176649 NCBI
Target Description BF176649 /REP_DB=TREMBL Accession /GB=BF176649 /CHR=2 /FEA=Genomic Cluster /DEF=EST31 Rare cDNA library from Caenorhabditis elegans adults Caenorhabditis elegans cDNA, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061941 NCBI Caenorhabditis elegans T05A8.3 (T05A8.3) mRNA, complete cds. 11/11 None
T05A8.3 ENSEMBL cdna:known chromosome:CEL140:II:2714649:2717435:-1 gene:T05A8.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2714657-2714866(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A8.3
Entrez Gene 173615 Entrez gene
SwissProt O44858 EMBL-EBI
WormBase CE18199 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494342 T05A8.3 [Caenorhabditis elegans] gb|AAB95020.1| Hypothetical protein T05A8.3 [Caenorhabditis elegans] 3.0E-44
blast CAE72405 Hypothetical protein CBG19564 [Caenorhabditis briggsae] 5.0E-22
Sequence
Target Sequence 
>C. ELEGANS:175581_AT
caagcaagcaatcactattttttctatccttcccagtttccagacaccactcccctcccc
ttcttttcgtaattattatcatcatcatcgccggcgagcgtttacttgtcattttcttct
acacaagatctttttttttctttattacattatcgatatctatgaacgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAGCAAGCAATCACTATTTTTTCT 685 185 22 Antisense
CAATCACTATTTTTTCTATCCTTCC 362 181 30 Antisense
CCCTTCTTTTCGTAATTATTATCAT 693 257 79 Antisense
AATTATTATCATCATCATCGCCGGC 503 175 92 Antisense
TCATCGCCGGCGAGCGTTTACTTGT 280 611 106 Antisense
GCGTTTACTTGTCATTTTCTTCTAC 237 291 119 Antisense
TTTACTTGTCATTTTCTTCTACACA 547 673 122 Antisense
GTCATTTTCTTCTACACAAGATCTT 38 469 129 Antisense
TTCTACACAAGATCTTTTTTTTTCT 238 679 138 Antisense
TTTTTTTCTTTATTACATTATCGAT 371 675 154 Antisense
TACATTATCGATATCTATGAACGGA 79 637 167 Antisense
Sequence Source Affymetrix Proprietary Database