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[175576_s_at]

Description CEXT00453 /REP_DB=TREMBL Accession /GB=M79916 /CHR=5 /FEA=Genomic Cluster /DEF=wEST00453 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSF38, mRNA sequence.
Cluster 6grp_highest_10_10 > 18      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 49      6grp_highest_sub > 04_05      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1586
1 2 3 4 range
A 52.1
(-3)
A 		1594.8
(3)
P 		1456.9
(2.5)
P 		68.4
(-2.9)
A 		1543
B 8.9
(-3)
A 		1285.6
(2.1)
P 		1509.8
(3)
P 		56.8
(-2.8)
A 		1501
C 55.5
(-3)
A 		1385.6
(2.8)
P 		1433.4
(3)
P 		87.1
(-2.9)
A 		1378
avr 38.8
(-3) 		1422
(2.8) 		1466.7
(3) 		70.8
(-2.9) 		1428

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 741
1 2 3 4 5 6 range
A 288.3
(-3)
P 		702.4
(0.4)
P 		658.4
(-0)
P 		1029.6
(3)
P 		875.6
(1.8)
P 		462.8
(-1.6)
P 		741
B 319.1
(-3)
P 		870.3
(2.3)
P 		661.8
(0.3)
P 		945.3
(3)
P 		891
(2.5)
P 		459.9
(-1.7)
P 		626
C 314.8
(-3)
P 		763.5
(1.3)
P 		705
(0.8)
P 		928.6
(2.9)
P 		934.4
(3)
P 		320.9
(-2.9)
P 		620
avr 307.4
(-3) 		778.7
(1.3) 		675.1
(0.3) 		967.8
(3) 		900.3
(2.4) 		414.5
(-2) 		660
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 497
1 2 3 4 range
A 19
(-2.9)
A 		346.2
(2.4)
P 		380.9
(3)
P 		10
(-3)
A 		371
B 2.8
(-3)
A 		317.5
(2.4)
P 		349.9
(3)
P 		12.1
(-2.8)
A 		347
C 18.4
(-3)
A 		398.4
(1.7)
P 		499.6
(3)
P 		14.7
(-3)
A 		485
avr 13.4
(-3) 		354
(2.2) 		410.1
(3) 		12.3
(-3) 		398

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 309
1 2 3 4 5 6 range
A 53.1
(-3)
P 		249.8
(2.6)
P 		143.4
(-0.4)
P 		261.1
(2.9)
P 		264.2
(3)
P 		112.7
(-1.3)
P 		211
B 111
(-3)
P 		289.7
(1.3)
P 		160.7
(-1.8)
P 		250.4
(0.3)
P 		362
(3)
P 		171.5
(-1.6)
P 		251
C 116.7
(-2.7)
P 		233
(0.9)
P 		179.4
(-0.8)
P 		186.7
(-0.6)
P 		302.3
(3)
P 		107.4
(-3)
P 		195
avr 93.6
(-3) 		257.5
(1.6) 		161.2
(-1.1) 		232.7
(0.9) 		309.5
(3) 		130.5
(-2) 		216
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175576_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22019
Sequence Type Exemplar sequence
Representative Public ID CEXT00453 NCBI
Target Description CEXT00453 /REP_DB=TREMBL Accession /GB=M79916 /CHR=5 /FEA=Genomic Cluster /DEF=wEST00453 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSF38, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071007(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071007 NCBI Caenorhabditis elegans Y75B7AR.1 (Y75B7AR.1) mRNA, complete cds. 11/11 None
Y75B7AR.1 ENSEMBL cdna:known chromosome:CEL140:V:1390992:1391870:-1 gene:Y75B7AR.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000007192 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1391061-1391640(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y75B7AR.1
Entrez Gene 178630 Entrez gene
SwissProt Q9N2X6 EMBL-EBI
WormBase CE27416 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60880 Hypothetical protein Y75B7AR.1 [Caenorhabditis elegans] ref|NP_503408.1| Y75B7AR.1 [Caenorhabditis elegans] 7.0E-50
blast CAE62352 Hypothetical protein CBG06429 [Caenorhabditis briggsae] 4.0E-41
Sequence
Target Sequence 
>C. ELEGANS:175576_S_AT
ggtgaacctcccagaggaggtccacgaccgtattcctccaccaccaggatttgctcagct
gccagctgaagttcaggctcagttgaagacgattcatcgtgacaagaacttggacttcca
ggagagacaggctgctattcacggagttcttgagaatttggctcccgaattcaagagact
tctcccaccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGAACCTCCCAGAGGAGGTCCAC 293 501 61 Antisense
CCAGAGGAGGTCCACGACCGTATTC 566 251 71 Antisense
CAGGATTTGCTCAGCTGCCAGCTGA 22 209 105 Antisense
GCTGCCAGCTGAAGTTCAGGCTCAG 507 297 118 Antisense
GTTCAGGCTCAGTTGAAGACGATTC 435 443 131 Antisense
GACGATTCATCGTGACAAGAACTTG 434 377 148 Antisense
GACTTCCAGGAGAGACAGGCTGCTA 684 369 173 Antisense
ACAGGCTGCTATTCACGGAGTTCTT 556 105 187 Antisense
GAGTTCTTGAGAATTTGGCTCCCGA 209 399 204 Antisense
TTGGCTCCCGAATTCAAGAGACTTC 143 703 218 Antisense
GAATTCAAGAGACTTCTCCCACCAC 335 325 227 Antisense
Sequence Source Affymetrix Proprietary Database