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[175572_s_at] retinal-binding protein like

Description CEXT00508 /REP_DB=TREMBL Accession /GB=M79971 /CHR=1 /FEA=Genomic Cluster /DEF=wEST00508 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSG09, mRNA sequence.
Cluster 6grp_highest_10_10 > 17      6grp_high1_10_10 > 51      4grp_highest_8_8 > 34      4grp_high_8_8 > 57      6grp_highest_nonorm > 45      6grp_total > 61      4grp_total > 62      6grp_highest_sub > 04      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 912
1 2 3 4 range
A 1495.5
(3)
P 		1061.7
(-0.3)
P 		1199.9
(0.7)
P 		718
(-3)
P 		778
B 1597.1
(3)
P 		1169.2
(-0.5)
P 		1258.2
(0.2)
P 		869.9
(-3)
P 		727
C 1622.1
(3)
P 		1135.1
(-0.2)
P 		1404.8
(1.6)
P 		710.2
(-3)
P 		912
avr 1571.6
(3) 		1122
(-0.3) 		1287.6
(0.9) 		766
(-3) 		806

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1849
1 2 3 4 5 6 range
A 1221
(-1.9)
P 		1880.1
(0.4)
P 		2621.2
(3)
P 		2604
(2.9)
P 		1960.2
(0.7)
P 		889.5
(-3)
P 		1732
B 2099.7
(0.3)
P 		2120.2
(0.4)
P 		2738.1
(3)
P 		2475.6
(1.9)
P 		2334.8
(1.3)
P 		1335
(-3)
P 		1403
C 1780.9
(-0.2)
P 		2118.9
(1.5)
P 		2134.7
(1.6)
P 		2411.6
(3)
P 		1643.5
(-0.9)
P 		1226.2
(-3)
P 		1185
avr 1700.5
(-0.6) 		2039.7
(1) 		2498
(3) 		2497.1
(3) 		1979.5
(0.7) 		1150.2
(-3) 		1348
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 439
1 2 3 4 range
A 544.5
(3)
P 		230.5
(-1.3)
P 		313.7
(-0.2)
P 		105.1
(-3)
P 		439
B 509.3
(3)
P 		288.8
(-1.1)
P 		291.6
(-1)
P 		185.4
(-3)
P 		324
C 537
(3)
P 		326.3
(-0)
P 		489.6
(2.3)
P 		119.8
(-3)
P 		417
avr 530.3
(3) 		281.9
(-0.8) 		365
(0.5) 		136.8
(-3) 		394

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 732
1 2 3 4 5 6 range
A 225.1
(-2.9)
P 		668.6
(3)
P 		570.8
(1.7)
P 		660.4
(2.9)
P 		591.5
(2)
P 		216.6
(-3)
P 		452
B 730.6
(0.1)
P 		705.7
(-0.2)
P 		664.9
(-0.8)
P 		655.7
(-0.9)
P 		948.6
(3)
P 		497.8
(-3)
P 		451
C 660.1
(3)
P 		646.5
(2.7)
P 		543.3
(0.2)
P 		485
(-1.2)
P 		531.8
(-0.1)
P 		410.5
(-3)
P 		250
avr 538.6
(0.1) 		673.6
(2.7) 		593
(1.1) 		600.4
(1.3) 		690.6
(3) 		375
(-3) 		316
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175572_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20342
Sequence Type Exemplar sequence
Representative Public ID CEXT00508 NCBI
Target Description CEXT00508 /REP_DB=TREMBL Accession /GB=M79971 /CHR=1 /FEA=Genomic Cluster /DEF=wEST00508 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSG09, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059592(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059592 NCBI Caenorhabditis elegans H06O01.3 (H06O01.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000021148 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7013217:7017198:1 11/11 None
SNAP00000021143 ENSEMBL cdna:SNAP chromosome:CEL140:I:7013852:7017198:1 11/11 None
H06O01.3 ENSEMBL cdna:known chromosome:CEL140:I:7013575:7017303:1 gene:H06O01.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7016539-7017163(+) 98.33 100.0
Public Domain and Genome References
Gene Title retinal-binding protein like
Ensembl H06O01.3
Entrez Gene 172431 Entrez gene
SwissProt O17907 EMBL-EBI
WormBase CE17969 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATGENOME1:19290_AT SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative at
ATH1-121501:263765_AT SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative at
CANINE:1596612_AT similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (hTAP) (Supernatant protein factor) (SPF) (Squalene transfer protein) cfa
CANINE:1587141_AT similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (hTAP) (Supernatant protein factor) (SPF) (Squalene transfer protein) cfa
CANINE:1583638_AT similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (hTAP) (Supernatant protein factor) (SPF) (Squalene transfer protein) cfa
CANINE_2:CFA.10916.1.A1_S_AT similar to SEC14-like protein 2 (Alpha-tocopherol associated protein) (TAP) (hTAP) (Supernatant protein factor) (SPF) (Squalene transfer protein) cfa
DROSOPHILA_2:1636193_AT dm
DROSGENOME1:147934_AT dm
CHICKEN:GGA.7256.1.S1_AT similar to SEC14-like 2 gga
HG-U133A:204541_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133_PLUS_2:204541_AT SEC14-like 2 (S. cerevisiae) hs
HG-FOCUS:204541_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133A_2:204541_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133_PLUS_2:232400_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133B:232400_AT SEC14-like 2 (S. cerevisiae) hs
HU35KSUBA:RC_AA076326_AT SEC14-like 2 (S. cerevisiae) hs
HU35KSUBA:RC_AA428325_AT SEC14-like 2 (S. cerevisiae) hs
HU35KSUBC:RC_Z40902_AT SEC14-like 2 (S. cerevisiae) hs
HU35KSUBD:RC_AA599924_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133_PLUS_2:230316_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133B:230316_AT SEC14-like 2 (S. cerevisiae) hs
U133_X3P:G7110714_3P_AT SEC14-like 2 (S. cerevisiae) hs
U133_X3P:HS.277728.2.A1_3P_S_AT SEC14-like 2 (S. cerevisiae) hs
U133_X3P:HS.277728.2.A1_3P_AT SEC14-like 2 (S. cerevisiae) hs
U133_X3P:HS.277728.1.A1_3P_AT SEC14-like 2 (S. cerevisiae) hs
U133_X3P:HS.193656.0.A1_3P_AT SEC14-like 2 (S. cerevisiae) hs
U133_X3P:HS.139876.0.A1_3P_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133_PLUS_2:232894_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133B:232894_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133_PLUS_2:232895_S_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133B:232895_S_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133_PLUS_2:240024_AT SEC14-like 2 (S. cerevisiae) hs
HG-U133B:240024_AT SEC14-like 2 (S. cerevisiae) hs
HG-U95AV2:32817_AT SEC14-like 2 (S. cerevisiae) hs
HG-U95B:42584_AT SEC14-like 2 (S. cerevisiae) hs
HG-U95D:88280_R_AT SEC14-like 2 (S. cerevisiae) hs
HG-U95D:78905_AT SEC14-like 2 (S. cerevisiae) hs
MG-U74AV2:96758_S_AT SEC14-like 2 (S. cerevisiae) mm
MU11KSUBA:AA250614_S_AT SEC14-like 2 (S. cerevisiae) mm
MG-U74AV2:96759_R_AT SEC14-like 2 (S. cerevisiae) mm
MG-U74BV2:109134_R_AT SEC14-like 2 (S. cerevisiae) mm
MOE430A:1424530_AT SEC14-like 2 (S. cerevisiae) mm
MOUSE430A_2:1424530_AT SEC14-like 2 (S. cerevisiae) mm
MOUSE430_2:1424530_AT SEC14-like 2 (S. cerevisiae) mm
MU19KSUBB:TC33713_R_AT SEC14-like 2 (S. cerevisiae) (Sec14l2), mRNA mm
RG-U34B:RC_AI008919_AT SEC14-like 2 (S. cerevisiae) rn
RAE230A:1374308_AT SEC14-like 2 (S. cerevisiae) rn
RAT230_2:1374308_AT SEC14-like 2 (S. cerevisiae) rn
RAE230A:1387252_AT SEC14-like 2 (S. cerevisiae) rn
RAT230_2:1387252_AT SEC14-like 2 (S. cerevisiae) rn
YEAST_2:1772400_AT Phosphatidylinositol/phosphatidylcholine transfer protein involved in coordinate regulation of PtdIns and PtdCho metabolism, products of which are regulators in Golgi to plasma membrane transport; functionally homologous to mammalian PITPs Sc
Protein Similarities
Method ID Description E-Value
blast CAB07482 Hypothetical protein H06O01.3 [Caenorhabditis elegans] ref|NP_491993.1| H06O01.3 [Caenorhabditis elegans] 0.0
blast CAE56992 Hypothetical protein CBG24859 [Caenorhabditis briggsae] 0.0
blast CAE73124 Hypothetical protein CBG20506 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Database ID Description E-Value
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.1E-8
Pfam IPR001251 EMBL-EBI Cellular retinaldehyde-binding)/triple function, C-terminal 2.1E-8
Sequence
Target Sequence 
>C. ELEGANS:175572_S_AT
ctggacctatatgactgatgaagatgacattgggtttgaaattcattatgataaaacagg
atcatgtgataagttaactgaaatggaaactgtttatccatatattcgtctcgaatgtac
aaatgttccaatcacaggacatctcgatgtgactgatgttggaaactatgttctcgaatt
cgacaactactattcgtggttctctgccaagcaattgcgctacaatattg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTGGACCTATATGACTGATGAAGAT 470 241 32 Antisense
AACTGTTTATCCATATATTCGTCTC 244 143 119 Antisense
GTTTATCCATATATTCGTCTCGAAT 585 449 123 Antisense
TCGTCTCGAATGTACAAATGTTCCA 359 603 137 Antisense
GTTCCAATCACAGGACATCTCGATG 198 441 156 Antisense
GACATCTCGATGTGACTGATGTTGG 75 371 169 Antisense
GAATTCGACAACTACTATTCGTGGT 277 323 207 Antisense
CAACTACTATTCGTGGTTCTCTGCC 193 189 215 Antisense
TATTCGTGGTTCTCTGCCAAGCAAT 477 661 222 Antisense
GGTTCTCTGCCAAGCAATTGCGCTA 553 505 229 Antisense
GCCAAGCAATTGCGCTACAATATTG 139 279 237 Antisense
Sequence Source Affymetrix Proprietary Database