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[175571_at]

Description AW057453 /REP_DB=TREMBL Accession /GB=AW057453 /CHR=4 /FEA=Genomic Cluster /DEF=ca04g09.y1 C elegans fem3 Q23 S1 Caenorhabditis elegans cDNA 5prime similar to gb:Y94H6A_148.q (ELEGANS);, mRNA sequence.
Cluster 6grp_total > 18      4grp_total > 22      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 36.9
(0.5)
A 		5.7
(-3)
A 		7
(-2.9)
A 		59.3
(3)
A 		54
B 23.3
(-3)
A 		30.1
(1.4)
A 		32.5
(3)
A 		29.1
(0.8)
A 		9
C 41.8
(3)
A 		16.1
(-1.2)
A 		4.7
(-3)
A 		23.1
(-0)
A 		37
avr 34
(2.1) 		17.3
(-2.3) 		14.7
(-3) 		37.2
(3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 56
(3)
A 		24.9
(-0.8)
A 		19.4
(-1.4)
A 		6.4
(-3)
A 		13.1
(-2.2)
A 		33.3
(0.3)
A 		50
B 44.3
(3)
A 		7.1
(-3)
A 		7.8
(-2.9)
A 		12.6
(-2.1)
A 		28.7
(0.5)
A 		7.4
(-3)
A 		37
C 35.9
(1.5)
A 		17.6
(-1)
A 		47
(3)
A 		2.4
(-3)
A 		24.8
(0)
A 		26.1
(0.2)
A 		45
avr 45.4
(3) 		16.5
(-1.5) 		24.7
(-0.2) 		7.1
(-3) 		22.2
(-0.6) 		22.3
(-0.6) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 13.4
(3)
A 		1.2
(-3)
A 		1.8
(-2.7)
A 		8.7
(0.7)
A 		12
B 7.4
(2.5)
A 		7.4
(2.5)
A 		7.5
(3)
A 		6.2
(-3)
A 		1
C 13.8
(3)
A 		4.6
(-1.5)
A 		1.6
(-3)
A 		3.9
(-1.9)
A 		12
avr 11.5
(3) 		4.4
(-2.4) 		3.6
(-3) 		6.3
(-0.9) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 15
1 2 3 4 5 6 range
A 10.3
(3)
A 		8.9
(2)
A 		4.2
(-1.2)
A 		1.6
(-3)
A 		3.9
(-1.4)
A 		8.1
(1.5)
A 		9
B 15.4
(3)
A 		2.4
(-2.8)
A 		1.9
(-3)
A 		3.3
(-2.4)
A 		11.7
(1.4)
A 		2.8
(-2.6)
A 		14
C 13.3
(3)
A 		5.4
(-0.7)
A 		12
(2.4)
A 		0.5
(-3)
A 		8
(0.5)
A 		8.7
(0.8)
A 		13
avr 13
(3) 		5.6
(-1) 		6
(-0.8) 		1.8
(-3) 		7.9
(0.3) 		6.5
(-0.5) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175571_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21649
Sequence Type Exemplar sequence
Representative Public ID AW057453 NCBI
Target Description AW057453 /REP_DB=TREMBL Accession /GB=AW057453 /CHR=4 /FEA=Genomic Cluster /DEF=ca04g09.y1 C elegans fem3 Q23 S1 Caenorhabditis elegans cDNA 5prime similar to gb:Y94H6A_148.q (ELEGANS);, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028335(11), NM_001028334(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028335 NCBI Caenorhabditis elegans Y54G2A.5b (Y54G2A.5) mRNA, complete cds. 11/11 None
NM_001028334 NCBI Caenorhabditis elegans Y54G2A.5a (Y54G2A.5) mRNA, complete cds. 11/11 None
SNAP00000036496 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2885453:2889018:1 11/11 None
GENEFINDER00000036581 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2887415:2888963:1 11/11 None
Y54G2A.5b ENSEMBL cdna:known chromosome:CEL140:IV:2887039:2889018:1 gene:Y54G2A.5 11/11 None
Y54G2A.5a.1 ENSEMBL cdna:known chromosome:CEL140:IV:2887049:2891501:1 gene:Y54G2A.5 11/11 A 
Y54G2A.5a.2 ENSEMBL cdna:known chromosome:CEL140:IV:2887049:2891279:1 gene:Y54G2A.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2888626-2888964(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y54G2A.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68529 Hypothetical protein Y54G2A.5a [Caenorhabditis elegans] ref|NP_001023505.1| Y54G2A.5a [Caenorhabditis elegans] 1.0E-125
blast AAP13745 Hypothetical protein Y54G2A.5b [Caenorhabditis elegans] ref|NP_001023506.1| Y54G2A.5b [Caenorhabditis elegans] 1.0E-109
blast AAP13745 Hypothetical protein Y54G2A.5b [Caenorhabditis elegans] ref|NP_001023506.1| Y54G2A.5b [Caenorhabditis elegans] 1.0E-105
blast AAP13745 Hypothetical protein Y54G2A.5b [Caenorhabditis elegans] ref|NP_001023506.1| Y54G2A.5b [Caenorhabditis elegans] 1.0E-101
blast AAK68529 Hypothetical protein Y54G2A.5a [Caenorhabditis elegans] ref|NP_001023505.1| Y54G2A.5a [Caenorhabditis elegans] 1.0E-99
Sequence
Target Sequence 
>C. ELEGANS:175571_AT
tgagagcaagtttgtcgagccggcagctccgccacggaagtcgattccgggatttatggc
ggctccaaagttcgcgtcgacaccgaagccagatgggattcgtagatcgatggtggatgg
atctttgccgacgccacgccgcggatctctcgtcaagcagcagcgggcacccgcgattgg
agacgtgacgccgatggagaacaaggcgagccggctgagacggctgaagctcgagga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAGAGCAAGTTTGTCGAGCCGGCA 656 565 25 Antisense
CTCCGCCACGGAAGTCGATTCCGGG 270 233 51 Antisense
CGATTCCGGGATTTATGGCGGCTCC 85 247 66 Antisense
TTATGGCGGCTCCAAAGTTCGCGTC 248 677 78 Antisense
CCAAAGTTCGCGTCGACACCGAAGC 25 275 89 Antisense
GTCGACACCGAAGCCAGATGGGATT 163 473 100 Antisense
GATGGTGGATGGATCTTTGCCGACG 73 409 133 Antisense
GCAGCGGGCACCCGCGATTGGAGAC 334 313 184 Antisense
GGAGACGTGACGCCGATGGAGAACA 196 519 203 Antisense
GAACAAGGCGAGCCGGCTGAGACGG 285 353 223 Antisense
GGCTGAGACGGCTGAAGCTCGAGGA 536 537 237 Antisense
Sequence Source Affymetrix Proprietary Database