[Home] | [Total List]

[175570_at]

Description AW057380_rc /REP_DB=TREMBL Accession /GB=AW057380 /CHR=5 /FEA=Genomic Cluster /DEF=ca03b01.x1 C elegans fem3 Q23 S1 Caenorhabditis elegans cDNA 3prime similar to gb:Y39G10A_244.b (ELEGANS);, mRNA sequence.
Cluster 6grp_total > 87      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 122
1 2 3 4 range
A 40
(2.7)
A 		26.7
(0.7)
A 		2.4
(-3)
A 		42.2
(3)
P 		40
B 34.4
(-0.9)
A 		42.8
(3)
P 		29.9
(-3)
A 		36.3
(-0)
A 		13
C 24.1
(-3)
A 		39.3
(-2.1)
P 		26
(-2.9)
A 		124.2
(3)
P 		100
avr 32.8
(-1.3) 		36.3
(-0.9) 		19.4
(-3) 		67.6
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 157
1 2 3 4 5 6 range
A 7.4
(-3)
A 		12.9
(-2.8)
A 		20.9
(-2.4)
A 		26.3
(-2.2)
A 		96.7
(0.9)
P 		144.3
(3)
P 		137
B 36.9
(-1.5)
P 		32.5
(-1.7)
A 		3.1
(-3)
A 		52.3
(-0.8)
A 		76
(0.3)
P 		134.4
(3)
P 		131
C 3.8
(-3)
A 		37.9
(-1.7)
A 		18.7
(-2.4)
A 		25.9
(-2.1)
A 		58.8
(-0.9)
P 		159.6
(3)
P 		156
avr 16
(-2.9) 		27.8
(-2.4) 		14.2
(-3) 		34.8
(-2.1) 		77.2
(-0.1) 		146.1
(3) 		132
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 14.6
(3)
A 		5.8
(-0.8)
A 		0.6
(-3)
A 		6.2
(-0.6)
P 		14
B 11
(3)
A 		10.6
(2.4)
P 		6.9
(-3)
A 		7.7
(-1.8)
A 		4
C 8
(-3)
A 		11.3
(-1.5)
P 		9.1
(-2.5)
A 		20.9
(3)
P 		13
avr 11.2
(2.6) 		9.2
(0.6) 		5.5
(-3) 		11.6
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 1.4
(-3)
A 		4.6
(-2.4)
A 		4.5
(-2.4)
A 		6.7
(-2.1)
A 		29.2
(1.9)
P 		35.1
(3)
P 		34
B 12.8
(-1.5)
P 		10.8
(-1.8)
A 		0.8
(-3)
A 		13.9
(-1.4)
A 		30.9
(0.7)
P 		50.1
(3)
P 		49
C 1.4
(-3)
A 		11.6
(-1.8)
A 		4.8
(-2.6)
A 		5.2
(-2.6)
A 		19
(-1)
P 		53.4
(3)
P 		52
avr 5.2
(-2.7) 		9
(-2.2) 		3.4
(-3) 		8.6
(-2.3) 		26.4
(0.2) 		46.2
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175570_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21809
Sequence Type Exemplar sequence
Representative Public ID AW057380 NCBI
Target Description AW057380_rc /REP_DB=TREMBL Accession /GB=AW057380 /CHR=5 /FEA=Genomic Cluster /DEF=ca03b01.x1 C elegans fem3 Q23 S1 Caenorhabditis elegans cDNA 3prime similar to gb:Y39G10A_244.b (ELEGANS);, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000039703 ENSEMBL cdna:SNAP chromosome:CEL140:I:4816292:4816855:1 None
SNAP00000029731 ENSEMBL cdna:SNAP chromosome:CEL140:V:14473780:14473974:-1 None
SNAP00000039703 ENSEMBL cdna:SNAP chromosome:CEL140:I:4816292:4816855:1 None
SNAP00000041068 ENSEMBL cdna:SNAP chromosome:CEL140:V:17116472:17116681:1 None
SNAP00000029731 ENSEMBL cdna:SNAP chromosome:CEL140:V:14473780:14473974:-1 None
SNAP00000031617 ENSEMBL cdna:SNAP chromosome:CEL140:V:7513682:7513900:-1 None
SNAP00000003530 ENSEMBL cdna:SNAP chromosome:CEL140:X:17275623:17275829:-1 None
SNAP00000039703 ENSEMBL cdna:SNAP chromosome:CEL140:I:4816292:4816855:1 None
SNAP00000031617 ENSEMBL cdna:SNAP chromosome:CEL140:V:7513682:7513900:-1 None
SNAP00000022475 ENSEMBL cdna:SNAP chromosome:CEL140:V:2991934:2992161:-1 None
SNAP00000029731 ENSEMBL cdna:SNAP chromosome:CEL140:V:14473780:14473974:-1 None
SNAP00000039703 ENSEMBL cdna:SNAP chromosome:CEL140:I:4816292:4816855:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000026290 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4816387-4816867(+) 98.12 98.12
chrV:17116618-17117628(+) 95.4 95.4
chrIII:11669466-11669942(-) 97.7 97.7
chrV:14473757-14474235(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175570_AT
acaactgaggtaccatgtgcaaaggattggcaaaagagattgagatgagtttgccaaaaa
ggttttcaggcaccttatagtcttaggagaaggttggaggaacatcaagtgtgaacaact
gaggtaccgtatagatgaactggcaagatccggatggaggaacggtcgcactcgtgtggt
ccgtaggaagcctcaaagatgcaagccactgacatgaaatatgaggatcgcccccttgta
ccagaatttgttaaattcttctggaagaagtcattcgtggaatatttgtcatcaaagagg
ggagatgttgggtatcaacgtgtattgacccacgacgtggctaagaagatcgtacaacgt
gaactctatgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACTGAGGTACCATGTGCAAAGG 612 107 76 Antisense
GGTTTTCAGGCACCTTATAGTCTTA 693 505 136 Antisense
GAGGTACCGTATAGATGAACTGGCA 136 403 196 Antisense
TGAACTGGCAAGATCCGGATGGAGG 6 573 211 Antisense
CGGATGGAGGAACGGTCGCACTCGT 631 241 226 Antisense
GCACTCGTGTGGTCCGTAGGAAGCC 651 295 243 Antisense
GAAGCCTCAAAGATGCAAGCCACTG 207 345 262 Antisense
TGAAATATGAGGATCGCCCCCTTGT 412 571 290 Antisense
TCATTCGTGGAATATTTGTCATCAA 153 619 346 Antisense
ACGTGTATTGACCCACGACGTGGCT 343 93 393 Antisense
GATCGTACAACGTGAACTCTATGAA 519 415 423 Antisense
Sequence Source Affymetrix Proprietary Database