[Home] | [Total List]

[175568_at]

Description CEXT00338 /REP_DB=TREMBL Accession /GB=M79801 /CHR=1 /FEA=Genomic Cluster /DEF=wEST00338 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSE11 similar to unc-15 (paramyosin), mRNA sequence.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 04      4grp_highest_8_8 > 24      4grp_high_8_8 > 51      6grp_highest_nonorm > 04      6grp_total > 14      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 31      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7448
1 2 3 4 range
A 6813.7
(1.5)
P 		8665.6
(3)
P 		6060.9
(0.9)
P 		1218
(-3)
P 		7448
B 6424
(2.3)
P 		7102.3
(3)
P 		6964.5
(2.9)
P 		1311
(-3)
P 		5791
C 6757.7
(2.7)
P 		7087.6
(3)
P 		6385.5
(2.3)
P 		1254.5
(-3)
P 		5833
avr 6665.1
(2.1) 		7618.5
(3) 		6470.3
(1.9) 		1261.2
(-3) 		6357

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5203
1 2 3 4 5 6 range
A 6028.4
(3)
P 		5902.4
(2.8)
P 		4418.4
(0.6)
P 		3121
(-1.4)
P 		3493.3
(-0.8)
P 		2061.8
(-3)
P 		3967
B 6293.8
(3)
P 		5192.1
(1.5)
P 		3651.3
(-0.6)
P 		3454.5
(-0.9)
P 		2955.2
(-1.6)
P 		1908.6
(-3)
P 		4385
C 6720.3
(3)
P 		4694.6
(0.7)
P 		4825.7
(0.8)
P 		3169.3
(-1.1)
P 		3465.2
(-0.8)
P 		1517.8
(-3)
P 		5203
avr 6347.5
(3) 		5263
(1.6) 		4298.5
(0.3) 		3248.3
(-1.1) 		3304.6
(-1) 		1829.4
(-3) 		4518
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2303
1 2 3 4 range
A 2480.9
(3)
P 		1881.1
(1.4)
P 		1584.4
(0.7)
P 		178.3
(-3)
P 		2303
B 2048.6
(3)
P 		1754.1
(2)
P 		1613.8
(1.5)
P 		279.4
(-3)
P 		1769
C 2237
(3)
P 		2037.7
(2.4)
P 		2225.5
(3)
P 		211.5
(-3)
P 		2026
avr 2255.5
(3) 		1891
(1.9) 		1807.9
(1.7) 		223.1
(-3) 		2032

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1989
1 2 3 4 5 6 range
A 1111.3
(-0.7)
P 		2099.2
(3)
P 		962.2
(-1.3)
P 		791.6
(-1.9)
P 		1054.1
(-0.9)
P 		502
(-3)
P 		1597
B 2189.9
(3)
P 		1728.2
(1.1)
P 		886.6
(-2.3)
P 		915
(-2.2)
P 		1200.6
(-1)
P 		711.7
(-3)
P 		1478
C 2490.9
(3)
P 		1432.4
(-0.2)
P 		1228.2
(-0.8)
P 		637.4
(-2.6)
P 		1121.3
(-1.1)
P 		508.1
(-3)
P 		1983
avr 1930.7
(3) 		1753.3
(2.2) 		1025.7
(-1) 		781.3
(-2.1) 		1125.3
(-0.6) 		573.9
(-3) 		1357
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175568_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20217
Sequence Type Exemplar sequence
Representative Public ID CEXT00338 NCBI
Target Description CEXT00338 /REP_DB=TREMBL Accession /GB=M79801 /CHR=1 /FEA=Genomic Cluster /DEF=wEST00338 Mixed stage, Stratagene (cat. no. 937006) Caenorhabditis elegans cDNA clone CEMSE11 similar to unc-15 (paramyosin), mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059684
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
F07A5.7.1 ENSEMBL cdna:known chromosome:CEL140:I:7384751:7391326:-1 gene:F07A5.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_059684 5/11 Cross Hyb Matching Probes None
F07A5.7.4 5/11 Cross Hyb Matching Probes A 
F07A5.7.3 2/11 Cross Hyb Matching Probes A 
F07A5.7.2 6/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7384755-7385307(-) 100.0 100.0
Public Domain and Genome References
Ensembl F07A5.7
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01965 Hypothetical protein F07A5.7 [Caenorhabditis elegans] emb|CAA96622.1| Hypothetical protein F07A5.7 [Caenorhabditis elegans] ref|NP_492085.1| F07A5.7 [Caenorhabditis elegans] 0.0
blast CAE66607 Hypothetical protein CBG11932 [Caenorhabditis briggsae] 0.0
blast CAA30857 paramyosin [Caenorhabditis elegans] sp|P10567|MYSP_CAEEL Paramyosin 0.0
Protein Domains
Database ID Description E-Value
scop a.1.1.Globins All alpha proteins; Globin-like; Globin-like; Globins 3.70000004768372
Pfam IPR002928 EMBL-EBI Myosin tail 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:175568_AT
tatttttcttctctatttctttcatgttcttcttctctttctttttaaattttcaattat
ttctctccccaacaaatgcgcccatccgctttttctatcgttcttccatcactaaatctt
ctcgactatctttttgttctgtcccactgcccctcgtgcttctgactgactgtcccccaa
tcaatatttcgaacaattaggtcaatcgagcgacatcatttcccacccacaattcatgtt
ttcccatcaatttttaatacaaatttattcaatgttccatccaaaccatcccgagtccct
ggttgcataagaaatcgtcgtcaataaaaattttgatacaaattaagcctgaaatttcaa
agtaaaacaataaaatcaaagtcttgacgagatcgctacctgcagatgagatgatgcaat
cgcaaccaggatacggtagaaattgtggtatgcgctgttttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTTTTCTTCTCTATTTCTTTCAT 677 661 35 Antisense
TCGACTATCTTTTTGTTCTGTCCCA 534 601 156 Antisense
CACAATTCATGTTTTCCCATCAATT 102 195 262 Antisense
ATTCAATGTTCCATCCAAACCATCC 36 13 301 Antisense
TCCCGAGTCCCTGGTTGCATAAGAA 636 597 323 Antisense
GGTTGCATAAGAAATCGTCGTCAAT 321 507 335 Antisense
AAGTCTTGACGAGATCGCTACCTGC 470 157 413 Antisense
GAGATCGCTACCTGCAGATGAGATG 174 395 423 Antisense
GATGAGATGATGCAATCGCAACCAG 619 411 439 Antisense
GCAATCGCAACCAGGATACGGTAGA 87 317 450 Antisense
AAATTGTGGTATGCGCTGTTTTCTT 402 115 474 Antisense
Sequence Source Affymetrix Proprietary Database