[Home] | [Total List]

[175566_s_at]

Description CE182 /REP_DB=TREMBL Accession /GB=T00182 /CHR=X /FEA=Genomic Cluster /DEF=wEST00903 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESC45 similar to C. elegans cDNA clone cm10b6, mRNA sequence.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 38      4grp_highest_8_8 > 58      4grp_high_8_8 > 34      6grp_highest_nonorm > 74      6grp_total > 37      4grp_total > 46      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 360
1 2 3 4 range
A 854.1
(3)
P 		753.9
(1.2)
P 		521.4
(-3)
P 		540.1
(-2.7)
P 		333
B 881.4
(3)
P 		642.1
(-1.9)
P 		585.8
(-3)
P 		645.5
(-1.8)
P 		296
C 801.2
(3)
P 		620.4
(-1.9)
P 		578.7
(-3)
P 		620.9
(-1.9)
P 		223
avr 845.6
(3) 		672.1
(-0.7) 		562
(-3) 		602.2
(-2.1) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 320
1 2 3 4 5 6 range
A 700.5
(1.9)
P 		761.7
(3)
P 		441.7
(-3)
P 		697.2
(1.8)
P 		499.2
(-1.9)
P 		662.4
(1.1)
P 		320
B 612.2
(3)
P 		602.4
(2.4)
P 		506.6
(-3)
P 		508.3
(-2.9)
P 		551.2
(-0.5)
P 		612
(3)
P 		106
C 709.8
(3)
P 		616.6
(-2.7)
P 		649.1
(-0.7)
P 		611.1
(-3)
P 		665.2
(0.3)
P 		652
(-0.5)
P 		99
avr 674.2
(3) 		660.2
(2.4) 		532.5
(-3) 		605.5
(0.1) 		571.9
(-1.3) 		642.1
(1.6) 		142
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 232
1 2 3 4 range
A 311
(3)
P 		163.6
(-0.8)
P 		136.3
(-1.5)
P 		79.1
(-3)
P 		232
B 281.1
(3)
P 		158.6
(-2.1)
P 		135.8
(-3)
P 		137.6
(-2.9)
P 		145
C 265.2
(3)
P 		178.4
(-0.2)
P 		201.7
(0.6)
P 		104.7
(-3)
P 		161
avr 285.8
(3) 		166.9
(-1) 		157.9
(-1.3) 		107.1
(-3) 		179

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 129.1
(-1.9)
P 		270.9
(3)
P 		96.2
(-3)
P 		176.8
(-0.2)
P 		150.6
(-1.1)
P 		161.3
(-0.8)
P 		175
B 213
(2.1)
P 		200.5
(1.4)
P 		123
(-3)
P 		134.6
(-2.3)
P 		224
(2.8)
P 		228.2
(3)
P 		105
C 263.1
(3)
P 		188.2
(-0.2)
P 		165.2
(-1.2)
P 		122.9
(-3)
P 		215.2
(1)
P 		218.3
(1.1)
P 		140
avr 201.7
(1.8) 		219.9
(3) 		128.1
(-3) 		144.8
(-1.9) 		196.6
(1.5) 		202.6
(1.9) 		92
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175566_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22270
Sequence Type Exemplar sequence
Representative Public ID CE182 NCBI
Target Description CE182 /REP_DB=TREMBL Accession /GB=T00182 /CHR=X /FEA=Genomic Cluster /DEF=wEST00903 Early embryo, Stratagene (cat. no. 937007) Caenorhabditis elegans cDNA clone CEESC45 similar to C. elegans cDNA clone cm10b6, mRNA sequence.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077717(11), NM_171786(11), NM_077716(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077717 NCBI Caenorhabditis elegans T07C5.1b (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 A 
NM_171786 NCBI Caenorhabditis elegans T07C5.1c (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 A 
NM_077716 NCBI Caenorhabditis elegans T07C5.1a (UDP-glucuronosyltransferase) mRNA, complete cds. 11/11 A 
SNAP00000042490 ENSEMBL cdna:SNAP chromosome:CEL140:X:12692225:12694608:1 10/11 None
GENEFINDER00000042492 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:12692225:12695476:1 11/11 None
T07C5.1b ENSEMBL cdna:known chromosome:CEL140:X:12691527:12692748:1 gene:T07C5.1 11/11 A 
T07C5.1c ENSEMBL cdna:known chromosome:CEL140:X:12691593:12695476:1 gene:T07C5.1 11/11 A 
T07C5.1a ENSEMBL cdna:known chromosome:CEL140:X:12691654:12695561:1 gene:T07C5.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12692216-12692734(+) 100.0 100.0
Public Domain and Genome References
Ensembl T07C5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD44148 Hypothetical protein T07C5.1c [Caenorhabditis elegans] ref|NP_741913.1| T07C5.1c [Caenorhabditis elegans] 0.0
blast CAA90296 Hypothetical protein T07C5.1a [Caenorhabditis elegans] ref|NP_510117.1| T07C5.1a [Caenorhabditis elegans] sp|Q22295|UGT16_CAEEL Putative UDP-glucuronosyltransferase UGT16 precursor (UDPGT) 0.0
blast CAE57225 Hypothetical protein CBG00090 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.8E-26
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.8E-26
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 2.3E-22
Pfam IPR002213 EMBL-EBI UDP-glucoronosyl/UDP-glucosyl transferase 6.8E-26
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_741913.1 1 496-513
NP_510117.1 1 498-515
T07C5.1c 1 496-513
T07C5.1a 1 498-515
GENEFINDER00000042492 1 417-434
Sequence
Target Sequence 
>C. ELEGANS:175566_S_AT
ggagaactctcacatcggattcatcgaccgcctgacatttgatgccgatttttggataga
tatgtgtgcagatctacttggaaaactgcctgagatgcagcatatcattgactacaagtt
cgacttggtcatctacaacgagattgacccatgtactccggctatagtgaggttgttcaa
catcccaaagacagtgctactctccagcgaggccatcatggacaaggttgcgtg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGAACTCTCACATCGGATTCATC 471 519 23 Antisense
CATCGACCGCCTGACATTTGATGCC 519 211 44 Antisense
AGATCTACTTGGAAAACTGCCTGAG 653 57 92 Antisense
GAGATGCAGCATATCATTGACTACA 46 397 114 Antisense
AGTTCGACTTGGTCATCTACAACGA 619 63 139 Antisense
AACGAGATTGACCCATGTACTCCGG 291 145 159 Antisense
ACCCATGTACTCCGGCTATAGTGAG 54 87 169 Antisense
AGGTTGTTCAACATCCCAAAGACAG 243 55 192 Antisense
CCAAAGACAGTGCTACTCTCCAGCG 249 275 207 Antisense
TCTCCAGCGAGGCCATCATGGACAA 310 609 223 Antisense
AGGCCATCATGGACAAGGTTGCGTG 257 51 232 Antisense
Sequence Source Affymetrix Proprietary Database