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[175564_s_at]

Description g1619870 /REP_DB=GenBank Identifier /CHR=2 /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 60      6grp_high1_10_10 > 06      4grp_highest_8_8 > 49      4grp_high_8_8 > 42      6grp_highest_nonorm > 11      6grp_total > 06      4grp_total > 54      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1801
1 2 3 4 range
A 2368.8
(3)
P 		1233.6
(-0.9)
P 		1262.5
(-0.8)
P 		625.3
(-3)
P 		1744
B 2415.8
(3)
P 		1706.1
(0.6)
P 		1071.7
(-1.6)
P 		653.3
(-3)
P 		1763
C 2348.1
(3)
P 		1628.4
(0.5)
P 		1275.4
(-0.7)
P 		615
(-3)
P 		1733
avr 2377.6
(3) 		1522.7
(0.1) 		1203.2
(-1) 		631.2
(-3) 		1746

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2075
1 2 3 4 5 6 range
A 2726.6
(3)
P 		2067.2
(1)
P 		1169.7
(-1.6)
P 		1069.5
(-1.9)
P 		1118.5
(-1.8)
P 		710.4
(-3)
P 		2016
B 2622.7
(3)
P 		1763.5
(0.1)
P 		925.8
(-2.7)
P 		1361.8
(-1.3)
P 		947.3
(-2.7)
P 		846.9
(-3)
P 		1776
C 2785.4
(3)
P 		1752.6
(-0.2)
P 		1580
(-0.7)
P 		1247.4
(-1.7)
P 		920.7
(-2.8)
P 		840.2
(-3)
P 		1945
avr 2711.6
(3) 		1861.1
(0.3) 		1225.2
(-1.7) 		1226.2
(-1.7) 		995.5
(-2.4) 		799.2
(-3) 		1912
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 862.5
(3)
P 		267.8
(-1.6)
P 		330
(-1.1)
P 		91.5
(-3)
P 		771
B 770.4
(3)
P 		421.4
(-0.3)
P 		248.3
(-2)
P 		139.2
(-3)
P 		631
C 777.3
(3)
P 		468.2
(0.2)
P 		444.5
(0)
P 		103.7
(-3)
P 		674
avr 803.4
(3) 		385.8
(-0.6) 		340.9
(-1) 		111.5
(-3) 		692

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 859
1 2 3 4 5 6 range
A 502.6
(0.5)
P 		735.2
(3)
P 		254.7
(-2.1)
P 		271.2
(-2)
P 		337.5
(-1.2)
P 		173
(-3)
P 		562
B 912.6
(3)
P 		587
(0.2)
P 		224.8
(-3)
P 		360.7
(-1.8)
P 		384.9
(-1.6)
P 		315.8
(-2.2)
P 		688
C 1032.4
(3)
P 		534.8
(-0.8)
P 		402.1
(-1.8)
P 		250.9
(-3)
P 		297.9
(-2.6)
P 		281.3
(-2.8)
P 		782
avr 815.9
(3) 		619
(0.9) 		293.9
(-2.6) 		294.3
(-2.6) 		340.1
(-2.1) 		256.7
(-3) 		559
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175564_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19742
Sequence Type Exemplar sequence
Representative Public ID 1619870 NCBI
Target Description g1619870 /REP_DB=GenBank Identifier /CHR=2 /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026802(11), NM_001026803(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026802 NCBI Caenorhabditis elegans RAB family member (rab-3) (rab-3) mRNA, complete cds. 11/11 None
NM_001026803 NCBI Caenorhabditis elegans RAB family member (rab-3) (rab-3) mRNA, complete cds. 11/11 None
C18A3.6b.2 ENSEMBL cdna:known chromosome:CEL140:II:5721729:5727638:-1 gene:C18A3.6 11/11 None
C18A3.6b.1 ENSEMBL cdna:known chromosome:CEL140:II:5721729:5724696:-1 gene:C18A3.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5721725-5727637(-) 95.64 100.0
Public Domain and Genome References
Ensembl C18A3.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68195 Rab family protein 3, isoform a [Caenorhabditis elegans] ref|NP_001021973.1| RAB family member (rab-3) [Caenorhabditis elegans] 1.0E-107
blast AAK68196 Rab family protein 3, isoform b [Caenorhabditis elegans] ref|NP_001021974.1| RAB family member (rab-3) [Caenorhabditis elegans] dbj|BAD07033.1| Rab3 [Caenorhabditis elegans] sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 gb|AAB16981.1| RAB-3 [Caenorhabditis elegans] gb|AAB16980.1| RAB-3 [Caenorhabditis elegans] 1.0E-106
blast CAE59180 Hypothetical protein CBG02488 [Caenorhabditis briggsae] 1.0E-106
blast AAK68195 Rab family protein 3, isoform a [Caenorhabditis elegans] ref|NP_001021973.1| RAB family member (rab-3) [Caenorhabditis elegans] 1.0E-106
Protein Domains
Database ID Description E-Value
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.5E-94
Pfam IPR001806 EMBL-EBI Ras GTPase superfamily 1.5E-94
Sequence
Target Sequence 
>C. ELEGANS:175564_S_AT
aattctacgttctattatactatctataaaaactcaaaattttcccaaattccaaacgca
ataatattaattttctaaaagcgcgtagctctcagttttccctctctcaacatctaggca
ccagatatatggatcgtaaattaacttataaatcgaatttctatgattttttggaaagta
agtttttttttaaatttaacttattttattttagggcgtagttggtttaattatcttttc
aaatccttttcactgtcacttattaagttttcattcagcgctatttttattaatatttta
acttattccaacgttcaatcatattccccatttgtaaaaaatcaacaatttctctcaaca
cttccaaacaattcccagagctgtgttttctaactaatcatagtcgcctattattattat
tattttatttattgtatttctctatttccttatttcctagtgacttcccagttcccaatg
attacacccacccgctgaaagattgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTCTACGTTCTATTATACTATCT 344 177 739 Antisense
TAAAAGCGCGTAGCTCTCAGTTTTC 57 641 814 Antisense
CTCTCTCAACATCTAGGCACCAGAT 575 229 840 Antisense
TCAAATCCTTTTCACTGTCACTTAT 518 627 977 Antisense
AAGTTTTCATTCAGCGCTATTTTTA 350 157 1003 Antisense
TTCCAACGTTCAATCATATTCCCCA 421 701 1044 Antisense
ATTTCTCTCAACACTTCCAAACAAT 108 17 1086 Antisense
ATTCCCAGAGCTGTGTTTTCTAACT 321 9 1109 Antisense
TGTATTTCTCTATTTCCTTATTTCC 300 561 1171 Antisense
TATTTCCTTATTTCCTAGTGACTTC 501 661 1181 Antisense
TACACCCACCCGCTGAAAGATTGAT 664 641 1221 Antisense
Sequence Source GenBank