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[175562_s_at]

Description g156236 /REP_DB=GenBank Identifier /GB=J05220.1 /PROTEIN_GB=AAA27980.1 /CHR=X /FEA=Mapped Transcript
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 14      4grp_highest_8_8 > 59      4grp_high_8_8 > 33      6grp_highest_nonorm > 21      6grp_total > 03      4grp_total > 47      6grp_highest_sub > De      6grp_cgc > 41      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 507
1 2 3 4 range
A 1029
(3)
P 		755.4
(-1.8)
P 		769.6
(-1.6)
P 		689.7
(-3)
P 		339
B 1155.6
(3)
P 		860.2
(-0.5)
P 		649
(-3)
P 		825
(-0.9)
P 		507
C 981.9
(3)
P 		654
(-3)
P 		684.9
(-2.4)
P 		736.6
(-1.5)
P 		328
avr 1055.5
(3) 		756.5
(-2.1) 		701.2
(-3) 		750.4
(-2.2) 		354

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1439
1 2 3 4 5 6 range
A 1966
(3)
P 		748.3
(-2.1)
P 		985.8
(-1.1)
P 		527.3
(-3)
P 		1524.3
(1.2)
P 		544.2
(-2.9)
P 		1439
B 1469.7
(1)
P 		1789.2
(3)
P 		1286.4
(-0.2)
P 		1287
(-0.2)
P 		1189.3
(-0.8)
P 		851.2
(-3)
P 		938
C 1090.8
(-0.7)
P 		1826.6
(3)
P 		843.3
(-2)
P 		1302.8
(0.3)
P 		644
(-3)
P 		651.8
(-3)
P 		1183
avr 1508.8
(3) 		1454.7
(2.6) 		1038.5
(-0.4) 		1039
(-0.4) 		1119.2
(0.2) 		682.4
(-3) 		826
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 274
1 2 3 4 range
A 374.6
(3)
P 		164
(-1.6)
P 		201.2
(-0.8)
P 		101
(-3)
P 		274
B 368.5
(3)
P 		212.4
(-1.3)
P 		150.4
(-3)
P 		175.8
(-2.3)
P 		218
C 325
(3)
P 		188
(-1.1)
P 		238.7
(0.4)
P 		124.2
(-3)
P 		201
avr 356
(3) 		188.1
(-1.5) 		196.8
(-1.3) 		133.7
(-3) 		222

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 362.4
(1.2)
P 		266.1
(-0.6)
P 		214.7
(-1.5)
P 		133.7
(-3)
P 		460
(3)
P 		132.5
(-3)
P 		328
B 511.4
(1.2)
P 		595.6
(3)
P 		312.4
(-3)
P 		340.9
(-2.4)
P 		483.2
(0.6)
P 		317.4
(-2.9)
P 		283
C 404.3
(0.4)
P 		557.3
(3)
P 		214.6
(-2.9)
P 		262
(-2.1)
P 		208.4
(-3)
P 		218.2
(-2.8)
P 		349
avr 426
(1.9) 		473
(3) 		247.2
(-2.4) 		245.5
(-2.5) 		383.9
(0.9) 		222.7
(-3) 		250
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175562_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19975
Sequence Type Exemplar sequence
Representative Public ID 156236 NCBI
Target Description g156236 /REP_DB=GenBank Identifier /GB=J05220.1 /PROTEIN_GB=AAA27980.1 /CHR=X /FEA=Mapped Transcript
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076598(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076598 NCBI Caenorhabditis elegans protein KINase family member (kin-2) (kin-2) mRNA, complete cds. 11/11 A 
R07E4.6a ENSEMBL cdna:known chromosome:CEL140:X:5970607:5977943:-1 gene:R07E4.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
180864 2 1 NM_076598 175562_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5970606-5977943(-) 100.0 100.0
Public Domain and Genome References
Ensembl R07E4.6
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508999 protein KINase family member (kin-2) [Caenorhabditis elegans] gb|AAA80405.1| Protein kinase protein 2, isoform a [Caenorhabditis elegans] sp|P30625|KAPR_CAEEL cAMP-dependent protein kinase regulatory subunit 0.0
blast AAA27980 cAMP-dependent protein kinase subunit R 0.0
blast NP_001024842 protein KINase family member (kin-2) [Caenorhabditis elegans] gb|AAK82909.1| Protein kinase protein 2, isoform b [Caenorhabditis elegans] 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR003117 EMBL-EBI cAMP-dependent protein kinase regulator, type II PKA R subunit 4.5E-17
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 3.0E-30
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.3E-30
Sequence
Target Sequence 
>C. ELEGANS:175562_S_AT
agttttgcatgttttctattccaccctaaaatttcaacattttcagtagctttacagctc
aatctttaccaaccatttccttcaattcctataggttaactcaaagaagaaacgaacacc
attcttcattaattaacattaagcagtgaatgccaaatcttgtctttaataatatgtaac
atataattttatgagaaataagaaatgcgcatccacaacaatcgtcccccccccccccta
cccagcacacatttttttcttatttcgttccacttctgaattctgaactccgtcaccctt
atccagcattgcgaagtctcttatctacacccccttccctcaacatccaacttctttttt
ttttcatttttatatatttttcacattcattggaaatccgctgtcatgtcgccatctcaa
tgttttcttgtctcttttttttcat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTTTGCATGTTTTCTATTCCACC 239 63 1728 Antisense
GCTTTACAGCTCAATCTTTACCAAC 276 305 1776 Antisense
AACCATTTCCTTCAATTCCTATAGG 20 147 1798 Antisense
GAAACGAACACCATTCTTCATTAAT 51 359 1836 Antisense
AAATGCGCATCCACAACAATCGTCC 313 119 1930 Antisense
CTACCCAGCACACATTTTTTTCTTA 386 225 1965 Antisense
TTTCTTATTTCGTTCCACTTCTGAA 144 673 1983 Antisense
CTTCTGAATTCTGAACTCCGTCACC 413 219 2000 Antisense
ATTGCGAAGTCTCTTATCTACACCC 478 5 2035 Antisense
CATGTCGCCATCTCAATGTTTTCTT 319 209 2132 Antisense
TGTTTTCTTGTCTCTTTTTTTTCAT 304 561 2148 Antisense
Sequence Source GenBank