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[175560_at]

Description AU113807_rc /REP_DB=TREMBL Accession /GB=AU113807 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk711h1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 53      4grp_highest_8_8 > 31      4grp_high_8_8 > 13      6grp_highest_nonorm > 71      6grp_total > 30      4grp_total > 11      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 263
1 2 3 4 range
A 133.1
(-1.1)
P 		89.3
(-2.3)
P 		66.5
(-3)
P 		275.7
(3)
P 		209
B 83.3
(-2.8)
P 		162.3
(-0.9)
P 		73.2
(-3)
P 		329.4
(3)
P 		256
C 179.1
(-0.5)
P 		90.6
(-3)
P 		109.4
(-2.5)
P 		300.8
(3)
P 		210
avr 131.8
(-1.7) 		114.1
(-2.1) 		83
(-3) 		302
(3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 165
(-2.9)
P 		238.5
(-1.6)
P 		490.3
(3)
P 		194.7
(-2.3)
P 		293.5
(-0.6)
P 		158.5
(-3)
P 		332
B 474
(2.4)
P 		433.3
(1.5)
P 		455.7
(2)
P 		499.9
(3)
P 		238.7
(-3)
P 		353.4
(-0.4)
P 		261
C 182.8
(-2.3)
P 		436.9
(2.5)
P 		146.1
(-3)
P 		461.3
(3)
P 		177.5
(-2.4)
P 		306.5
(0.1)
P 		315
avr 273.9
(-1.5) 		369.6
(2.4) 		364
(2.1) 		385.3
(3) 		236.6
(-3) 		272.8
(-1.5) 		149
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 48.4
(3)
P 		19.4
(-2.6)
P 		17.4
(-3)
P 		40.4
(1.5)
P 		31
B 26.6
(-1.9)
P 		40.1
(-0.4)
P 		17
(-3)
P 		70.2
(3)
P 		53
C 59.3
(3)
P 		26.1
(-3)
P 		38.1
(-0.8)
P 		50.7
(1.4)
P 		33
avr 44.8
(1.2) 		28.5
(-2.1) 		24.2
(-3) 		53.8
(3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 135
1 2 3 4 5 6 range
A 30.4
(-3)
P 		84.8
(1.3)
P 		106.8
(3)
P 		49.4
(-1.5)
P 		88.6
(1.6)
P 		38.6
(-2.4)
P 		76
B 164.9
(3)
P 		144.2
(1.2)
P 		110.7
(-1.8)
P 		132.4
(0.1)
P 		97
(-3)
P 		131.8
(0.1)
P 		68
C 67.8
(-1.1)
P 		133.3
(3)
P 		37.2
(-3)
P 		92.8
(0.5)
P 		57.4
(-1.7)
P 		102.6
(1.1)
P 		96
avr 87.7
(-2) 		120.8
(3) 		84.9
(-2.4) 		91.5
(-1.4) 		81
(-3) 		91
(-1.5) 		40
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175560_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28235
Sequence Type Exemplar sequence
Representative Public ID AU113807 NCBI
Target Description AU113807_rc /REP_DB=TREMBL Accession /GB=AU113807 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk711h1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU113807
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU113807 AU113807_rc /REP_DB=TREMBL Accession /GB=AU113807 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk711h1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072922 11/11 Negative Strand Matching Probes A 
F59E11.7a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:8993585-8994142(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175560_AT
ttctcaacactgccgatgcagatcgatgaacgaaggtttgcggcctccttctcataacgt
ctcgtcatatcgtcgccacaaatggtgctgatctgtgtttttatgcattcttgtatatca
ttccatttcaagcatttttccttactggttccatgaaaatcattgaatagagtatgcaag
caagctttttcttcgttcctcttgtcgaatagcttgtttgcacagtctgcaaaatcttgg
ttgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTCAACACTGCCGATGCAGATCG 304 691 13 Antisense
GATGAACGAAGGTTTGCGGCCTCCT 618 407 37 Antisense
CATAACGTCTCGTCATATCGTCGCC 282 213 65 Antisense
GTCGCCACAAATGGTGCTGATCTGT 594 475 84 Antisense
GCTGATCTGTGTTTTTATGCATTCT 32 297 99 Antisense
GCATTCTTGTATATCATTCCATTTC 692 307 117 Antisense
CATTCCATTTCAAGCATTTTTCCTT 539 217 131 Antisense
CATTTTTCCTTACTGGTTCCATGAA 677 213 145 Antisense
TTTTCTTCGTTCCTCTTGTCGAATA 91 677 199 Antisense
CGAATAGCTTGTTTGCACAGTCTGC 673 253 218 Antisense
GCACAGTCTGCAAAATCTTGGTTGT 432 317 232 Antisense
Sequence Source Affymetrix Proprietary Database