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[175558_s_at]

Description AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read.
Cluster 6grp_total > 03      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 34.9
(-3)
A 		64.1
(2.7)
A 		65.5
(3)
A 		39.9
(-2)
A 		31
B 37.2
(-2.9)
A 		100.4
(3)
A 		35.7
(-3)
A 		58.7
(-0.9)
A 		65
C 30.7
(-3)
A 		42.6
(-0.7)
A 		59.9
(2.7)
A 		61.7
(3)
A 		31
avr 34.3
(-3) 		69
(3) 		53.7
(0.4) 		53.4
(0.3) 		35

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 78
1 2 3 4 5 6 range
A 79.5
(3)
A 		29.7
(-0.8)
A 		36
(-0.3)
A 		23.2
(-1.3)
A 		55.6
(1.2)
A 		1.3
(-3)
A 		78
B 64.8
(2)
A 		54.8
(0.7)
A 		25.9
(-3)
A 		72.6
(3)
A 		46
(-0.4)
P 		28
(-2.7)
A 		47
C 7.6
(-2.9)
A 		50.1
(1.2)
A 		53.3
(1.5)
A 		68.6
(3)
A 		7
(-3)
A 		35.5
(-0.2)
A 		62
avr 50.6
(2.2) 		44.9
(1.2) 		38.4
(0) 		54.8
(3) 		36.2
(-0.4) 		21.6
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 12.7
(0.7)
A 		13.9
(1.3)
A 		17.1
(3)
A 		5.8
(-3)
A 		11
B 11.9
(-1.7)
A 		24.8
(3)
A 		8.3
(-3)
A 		12.5
(-1.5)
A 		17
C 10.2
(-3)
A 		12.2
(-1.9)
A 		20.9
(3)
A 		10.4
(-2.9)
A 		11
avr 11.6
(-1.4) 		17
(3) 		15.4
(1.7) 		9.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 14.7
(2.2)
A 		10.6
(0.7)
A 		7.8
(-0.3)
A 		5.9
(-1)
A 		16.8
(3)
A 		0.3
(-3)
A 		17
B 22.5
(3)
A 		18.2
(1.4)
A 		6.3
(-3)
A 		19.2
(1.8)
A 		18.7
(1.6)
P 		10.4
(-1.5)
A 		16
C 2.8
(-2.8)
A 		15.3
(3)
A 		13.6
(2.2)
A 		13.8
(2.3)
A 		2.3
(-3)
A 		11.9
(1.4)
A 		13
avr 13.3
(1.8) 		14.7
(3) 		9.2
(-1.6) 		13
(1.6) 		12.6
(1.3) 		7.5
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175558_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28245
Sequence Type Exemplar sequence
Representative Public ID AU115873 NCBI
Target Description AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AU115873
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AU115873 AU115873_rc /REP_DB=TREMBL Accession /GB=AU115873 /CHR=X /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk737h12 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_076740 11/11 Negative Strand Matching Probes A 
SNAP00000015667 11/11 Negative Strand Matching Probes None
GENEFINDER00000015670 11/11 Negative Strand Matching Probes None
H22K11.4 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6787281-6787615(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175558_S_AT
tatcctgttcatcactttcattactcagagggtttctgtacaaatgcaaagaacttccac
actgttttgccgcttctgcaacagtttgttttccaaccgggacatgatcaactgaaggg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCCTGTTCATCACTTTCATTACT 210 659 13 Antisense
TGTTCATCACTTTCATTACTCAGAG 15 563 18 Antisense
ATCACTTTCATTACTCAGAGGGTTT 124 29 23 Antisense
AGAGGGTTTCTGTACAAATGCAAAG 591 67 39 Antisense
AAAGAACTTCCACACTGTTTTGCCG 266 121 60 Antisense
TGTTTTGCCGCTTCTGCAACAGTTT 634 561 75 Antisense
GCCGCTTCTGCAACAGTTTGTTTTC 342 285 81 Antisense
TGCAACAGTTTGTTTTCCAACCGGG 206 575 89 Antisense
GTTTGTTTTCCAACCGGGACATGAT 457 447 96 Antisense
TTCCAACCGGGACATGATCAACTGA 75 687 103 Antisense
AACCGGGACATGATCAACTGAAGGG 294 147 107 Antisense
Sequence Source Affymetrix Proprietary Database