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[175557_at]

Description AU115772_rc /REP_DB=TREMBL Accession /GB=AU115772 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736f11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 49      4grp_high_8_8 > 41      6grp_highest_nonorm > 25      6grp_total > 52      4grp_total > 54      6grp_highest_sub > 03      6grp_cgc > 82      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4906
1 2 3 4 range
A 5527.2
(3)
P 		4296.3
(0.9)
P 		2992.7
(-1.3)
P 		2011.3
(-3)
P 		3516
B 6067
(3)
P 		3028.3
(-1.2)
P 		3434.1
(-0.7)
P 		1750.8
(-3)
P 		4316
C 6656.6
(3)
P 		3334.6
(-1.2)
P 		3021
(-1.6)
P 		1873.2
(-3)
P 		4783
avr 6083.6
(3) 		3553.1
(-0.6) 		3149.3
(-1.2) 		1878.4
(-3) 		4205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6665
1 2 3 4 5 6 range
A 3773.8
(-1.4)
P 		4158.9
(-1)
P 		8648.6
(3)
P 		3182.6
(-1.9)
P 		3179
(-1.9)
P 		1984
(-3)
P 		6665
B 4200.2
(-1.9)
P 		5655.9
(0)
P 		7969.3
(3)
P 		5116.7
(-0.7)
P 		3727.9
(-2.5)
P 		3336
(-3)
P 		4633
C 3641.5
(-0.9)
P 		5634.6
(3)
P 		3859
(-0.5)
P 		5326.7
(2.4)
P 		3152.4
(-1.9)
P 		2592.8
(-3)
P 		3042
avr 3871.8
(-1.2) 		5149.8
(0.6) 		6825.6
(3) 		4542
(-0.3) 		3353.1
(-2) 		2637.6
(-3) 		4188
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1909
1 2 3 4 range
A 2012.5
(3)
P 		932.6
(-0.8)
P 		782.3
(-1.3)
P 		294.4
(-3)
P 		1718
B 1934.7
(3)
P 		747.9
(-1.6)
P 		795.8
(-1.4)
P 		373.1
(-3)
P 		1562
C 2203.5
(3)
P 		958.7
(-1)
P 		1052.9
(-0.7)
P 		315.8
(-3)
P 		1888
avr 2050.2
(3) 		879.7
(-1.1) 		877
(-1.1) 		327.8
(-3) 		1722

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1452
1 2 3 4 5 6 range
A 695.7
(-2.1)
P 		1479.1
(1.3)
P 		1883.5
(3)
P 		807.2
(-1.6)
P 		959.3
(-1)
P 		483.1
(-3)
P 		1400
B 1461.5
(-1.1)
P 		1882.6
(2.5)
P 		1935.2
(3)
P 		1355.2
(-2)
P 		1514.6
(-0.7)
P 		1244
(-3)
P 		691
C 1349.8
(0.4)
P 		1719.3
(3)
P 		982.2
(-2.2)
P 		1071.2
(-1.6)
P 		1020.1
(-1.9)
P 		868
(-3)
P 		851
avr 1169
(-0.8) 		1693.7
(3) 		1600.3
(2.3) 		1077.9
(-1.5) 		1164.7
(-0.8) 		865
(-3) 		829
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175557_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21486
Sequence Type Exemplar sequence
Representative Public ID AU115772 NCBI
Target Description AU115772_rc /REP_DB=TREMBL Accession /GB=AU115772 /CHR=4 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk736f11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028455(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028455 NCBI Caenorhabditis elegans ZK809.8 (ZK809.8) mRNA, complete cds. 11/11 None
ZK809.8.2 ENSEMBL cdna:known chromosome:CEL140:IV:11645567:11647649:-1 gene:ZK809.8 11/11 None
ZK809.8.1 ENSEMBL cdna:known chromosome:CEL140:IV:11645567:11647649:-1 gene:ZK809.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11645644-11645921(-) 87.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK809.8
Entrez Gene 178093 Entrez gene
SwissProt Q86D00 EMBL-EBI
WormBase CE33912 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD89755 Hypothetical protein ZK809.8 [Caenorhabditis elegans] ref|NP_001023626.1| ZK809.8 [Caenorhabditis elegans] 4.0E-10
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023626.1 1 21-43
ZK809.8.2 1 21-43
ZK809.8.1 1 21-43
Sequence
Target Sequence 
>C. ELEGANS:175557_AT
atgggtatgtgaggaggatgacgtcacgaaacgcgtgccacataagttcccgattctgag
tgtcgtagttgatcgaagctgtaatttttttttgatttttttgattattttaatattgtc
atcagaactgaatctgaacatttcatgttttcgaaacgtcatttttgatactgtattata
attctgaatctcgattttcttaccctgcaatgtattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGTATGTGAGGAGGATGACGTC 238 51 31 Antisense
GATGACGTCACGAAACGCGTGCCAC 266 411 47 Antisense
CGAAACGCGTGCCACATAAGTTCCC 254 253 57 Antisense
GCCACATAAGTTCCCGATTCTGAGT 99 279 67 Antisense
AGTTCCCGATTCTGAGTGTCGTAGT 190 61 75 Antisense
GAGTGTCGTAGTTGATCGAAGCTGT 209 401 88 Antisense
TGATCGAAGCTGTAATTTTTTTTTG 143 565 100 Antisense
GAACATTTCATGTTTTCGAAACGTC 528 349 166 Antisense
GAAACGTCATTTTTGATACTGTATT 115 359 183 Antisense
TCTGAATCTCGATTTTCTTACCCTG 195 609 213 Antisense
GATTTTCTTACCCTGCAATGTATTT 157 429 223 Antisense
Sequence Source Affymetrix Proprietary Database