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[175556_at] protein S10

Description AV198761_rc /REP_DB=TREMBL Accession /GB=AV198761 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 09      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 74      6grp_total > 90      4grp_total > 46      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 548
1 2 3 4 range
A 825.5
(3)
P 		604.1
(-0)
P 		428.8
(-2.4)
P 		386.1
(-3)
P 		439
B 934
(3)
P 		589.7
(-1.2)
P 		446.3
(-3)
P 		516.3
(-2.1)
P 		488
C 820
(3)
P 		506.7
(-3)
P 		536.9
(-2.4)
P 		523.9
(-2.7)
P 		313
avr 859.8
(3) 		566.8
(-1.5) 		470.7
(-3) 		475.4
(-2.9) 		389

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 529
1 2 3 4 5 6 range
A 844.4
(3)
P 		599.1
(-0.4)
P 		406.9
(-3)
P 		659.9
(0.5)
P 		810.4
(2.5)
P 		603.2
(-0.3)
P 		438
B 769.3
(1.3)
P 		691.2
(-0)
P 		522
(-3)
P 		863.8
(3)
P 		612.2
(-1.4)
P 		569.9
(-2.2)
P 		342
C 718.5
(1)
P 		754.8
(1.5)
P 		362.2
(-3)
P 		891.2
(3)
P 		529.2
(-1.1)
P 		551.1
(-0.9)
P 		529
avr 777.4
(2.6) 		681.7
(1) 		430.4
(-3) 		805
(3) 		650.6
(0.5) 		574.7
(-0.7) 		375
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 244
1 2 3 4 range
A 300.5
(3)
P 		131.1
(-1.2)
P 		112.1
(-1.6)
P 		56.5
(-3)
P 		244
B 297.8
(3)
P 		145.6
(-1.7)
P 		103.4
(-3)
P 		110
(-2.8)
P 		194
C 271.4
(3)
P 		145.7
(-1.1)
P 		187.1
(0.2)
P 		88.3
(-3)
P 		183
avr 289.9
(3) 		140.8
(-1.4) 		134.2
(-1.6) 		84.9
(-3) 		205

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 179
1 2 3 4 5 6 range
A 155.7
(-0.4)
P 		213.1
(1.8)
P 		88.6
(-3)
P 		167.4
(0)
P 		244.5
(3)
P 		146.9
(-0.8)
P 		156
B 267.7
(3)
P 		230.1
(1.4)
P 		126.8
(-3)
P 		228.8
(1.3)
P 		248.7
(2.2)
P 		212.5
(0.6)
P 		141
C 266.3
(3)
P 		230.3
(1.8)
P 		92.2
(-3)
P 		179.2
(-0)
P 		171.2
(-0.3)
P 		184.5
(0.2)
P 		174
avr 229.9
(3) 		224.5
(2.7) 		102.5
(-3) 		191.8
(1.2) 		221.5
(2.6) 		181.3
(0.7) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175556_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22182
Sequence Type Exemplar sequence
Representative Public ID AV198761 NCBI
Target Description AV198761_rc /REP_DB=TREMBL Accession /GB=AV198761 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk380c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077223(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077223 NCBI Caenorhabditis elegans F34H10.3 (F34H10.3) mRNA, complete cds. 11/11 None
F34H10.3 ENSEMBL cdna:known chromosome:CEL140:X:9633229:9634978:-1 gene:F34H10.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:9633294-9633571(-) 100.0 100.0
Public Domain and Genome References
Gene Title protein S10
Ensembl F34H10.3
Entrez Gene 181180 Entrez gene
SwissProt Q09559 EMBL-EBI
WormBase CE01573 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA87036 Hypothetical protein F34H10.3 [Caenorhabditis elegans] ref|NP_509624.1| F34H10.3 [Caenorhabditis elegans] 1.0E-117
blast CAE69778 Hypothetical protein CBG16064 [Caenorhabditis briggsae] 3.0E-82
Sequence
Target Sequence 
>C. ELEGANS:175556_AT
aaatatcattgtatgcttttcacaatttagttgccctcagttactctacttttgtatttt
tgtatctaaattcctcatctctgtcctagcttttcgaataacaaacgatatcattgtatc
aatgtcctgtgaatttccccttgcagttttatatcgtgattccttccgtagaccctcggt
tttaactactctatttttactcccaacacatttattttgtatattgaaaaaatccggctt
gccaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATATCATTGTATGCTTTTCACAA 42 117 13 Antisense
GCTTTTCACAATTTAGTTGCCCTCA 28 305 27 Antisense
AATTTAGTTGCCCTCAGTTACTCTA 190 175 36 Antisense
GCCCTCAGTTACTCTACTTTTGTAT 121 287 45 Antisense
TGTATCTAAATTCCTCATCTCTGTC 322 561 73 Antisense
ATCTCTGTCCTAGCTTTTCGAATAA 175 33 89 Antisense
GTATCAATGTCCTGTGAATTTCCCC 678 451 128 Antisense
GAATTTCCCCTTGCAGTTTTATATC 375 325 143 Antisense
TTATATCGTGATTCCTTCCGTAGAC 594 679 161 Antisense
TTTACTCCCAACACATTTATTTTGT 407 673 208 Antisense
ATTGAAAAAATCCGGCTTGCCAAAT 391 3 235 Antisense
Sequence Source Affymetrix Proprietary Database