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[175553_at]

Description AU113674_rc /REP_DB=TREMBL Accession /GB=AU113674 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 35      6grp_high1_10_10 > 42      4grp_highest_8_8 > 10      4grp_high_8_8 > 55      6grp_highest_nonorm > 62      6grp_total > 21      4grp_total > 56      6grp_highest_sub > 03      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 290
1 2 3 4 range
A 211.3
(-1.1)
P 		255
(0.1)
P 		364.9
(3)
P 		140.9
(-3)
P 		224
B 227.2
(-2.6)
P 		309.4
(2.1)
P 		325
(3)
P 		220
(-3)
P 		105
C 204.3
(-3)
P 		338.9
(0.6)
P 		430.5
(3)
P 		271.5
(-1.2)
P 		226
avr 214.3
(-2.9) 		301.1
(0.3) 		373.5
(3) 		210.8
(-3) 		163

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 760
1 2 3 4 5 6 range
A 390.2
(-1.4)
P 		613.7
(0.8)
P 		832.4
(3)
P 		432.4
(-1)
P 		322.3
(-2.1)
P 		235.2
(-3)
P 		597
B 375.2
(-2.4)
P 		670.4
(0.2)
P 		975.4
(3)
P 		476.9
(-1.5)
P 		310.8
(-3)
P 		325.2
(-2.9)
P 		665
C 315.6
(-1.8)
P 		703.7
(3)
P 		653.7
(2.4)
P 		392.2
(-0.8)
P 		215.6
(-3)
P 		286.6
(-2.1)
P 		488
avr 360.3
(-2.1) 		662.6
(1.2) 		820.5
(3) 		433.8
(-1.3) 		282.9
(-3) 		282.3
(-3) 		538
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 129
1 2 3 4 range
A 76.9
(1.5)
P 		55.4
(-0.2)
P 		95.4
(3)
P 		20.6
(-3)
P 		75
B 72.4
(2.2)
P 		76.4
(3)
P 		75.3
(2.8)
P 		46.9
(-3)
P 		30
C 67.6
(-1.7)
P 		97.4
(-0)
P 		150
(3)
P 		45.8
(-3)
P 		104
avr 72.3
(-0) 		76.4
(0.4) 		106.9
(3) 		37.8
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 180
1 2 3 4 5 6 range
A 71.9
(-2.5)
P 		218.3
(3)
P 		181.3
(1.6)
P 		109.7
(-1)
P 		97.3
(-1.5)
P 		57.3
(-3)
P 		161
B 130.6
(-2.5)
P 		223.1
(2.3)
P 		236.9
(3)
P 		126.3
(-2.7)
P 		126.3
(-2.7)
P 		121.3
(-3)
P 		116
C 117
(-1)
P 		214.7
(3)
P 		166.4
(1)
P 		78.9
(-2.6)
P 		69.8
(-3)
P 		95.9
(-1.9)
P 		145
avr 106.5
(-2.3) 		218.7
(3) 		194.9
(1.9) 		105
(-2.4) 		97.8
(-2.7) 		91.5
(-3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175553_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22191
Sequence Type Exemplar sequence
Representative Public ID AU113674 NCBI
Target Description AU113674_rc /REP_DB=TREMBL Accession /GB=AU113674 /CHR=X /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk710d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076399 NCBI Caenorhabditis elegans K02G10.3 (K02G10.3) mRNA, complete cds. 11/11 A 
GENEFINDER00000043404 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:4673778:4677168:1 10/11 None
SNAP00000043392 ENSEMBL cdna:SNAP chromosome:CEL140:X:4675842:4677168:1 10/11 None
K02G10.3.1 ENSEMBL cdna:known chromosome:CEL140:X:4673747:4677253:1 gene:K02G10.3 11/11 None
K02G10.3.2 ENSEMBL cdna:known chromosome:CEL140:X:4673778:4677213:1 gene:K02G10.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4676600-4677244(+) 91.67 100.0
Public Domain and Genome References
Gene Title
Ensembl K02G10.3
Entrez Gene 180740 Entrez gene
SwissProt Q95QD1 EMBL-EBI
WormBase CE31029 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1605173_AT similar to CG11737-PA cfa
CANINE_2:CFA.1746.1.S1_AT similar to CG11737-PA cfa
CANINE_2:CFA.19775.1.S1_AT similar to CG11737-PA cfa
CANINE_2:CFAAFFX.7525.1.S1_S_AT similar to CG11737-PA cfa
DROSOPHILA_2:1632034_AT dm
DROSGENOME1:149504_AT dm
CHICKEN:GGA.1945.1.S1_AT similar to hypothetical protein FLJ22104 gga
CHICKEN:GGAAFFX.25211.1.S1_AT similar to hypothetical protein FLJ22104 gga
HG-U133_PLUS_2:222209_S_AT hypothetical protein FLJ22104 hs
HG-U133A_2:222209_S_AT hypothetical protein FLJ22104 hs
HG-U133A:222209_S_AT hypothetical protein FLJ22104 hs
HU35KSUBB:RC_AA171529_AT hypothetical protein FLJ22104 hs
U133_X3P:HS2.378492.1.S1_3P_AT hypothetical protein FLJ22104 hs
U133_X3P:HS.183887.1.S1_3P_A_AT hypothetical protein FLJ22104 hs
HG-U133_PLUS_2:1554866_AT hypothetical protein FLJ22104 hs
HG-U95C:63777_R_AT hypothetical protein FLJ22104 hs
HG-U95D:73921_AT hypothetical protein FLJ22104 hs
HG-U95AV2:38245_I_AT Hypothetical protein FLJ22104 hs
HG-U95AV2:38246_R_AT Hypothetical protein FLJ22104 hs
HG-U95E:70509_AT Hypothetical protein FLJ22104 hs
HG-U95E:85504_I_AT Hypothetical protein FLJ22104 hs
HG-U95E:85507_F_AT Hypothetical protein FLJ22104 hs
HU35KSUBC:RC_N69100_AT Hypothetical protein FLJ22104 hs
MG-U74BV2:111340_AT RIKEN cDNA 2810439K08 gene mm
MOE430A:1426435_AT RIKEN cDNA 2810439K08 gene mm
MOUSE430A_2:1426435_AT RIKEN cDNA 2810439K08 gene mm
MOUSE430_2:1426435_AT RIKEN cDNA 2810439K08 gene mm
MOE430A:1452074_AT RIKEN cDNA 2810439K08 gene mm
MOUSE430A_2:1452074_AT RIKEN cDNA 2810439K08 gene mm
MOUSE430_2:1452074_AT RIKEN cDNA 2810439K08 gene mm
MU19KSUBC:TC36615_AT RIKEN cDNA 2810439K08 gene, mRNA (cDNA clone MGC:28490 IMAGE:4165990) mm
RG-U34C:RC_AI175635_AT similar to RIKEN cDNA 2810439K08 rn
RAE230B:1392466_AT similar to RIKEN cDNA 2810439K08 rn
RAT230_2:1392466_AT similar to RIKEN cDNA 2810439K08 rn
Protein Similarities
Method ID Description E-Value
blast AAK39255 Hypothetical protein K02G10.3 [Caenorhabditis elegans] ref|NP_508800.2| K02G10.3 [Caenorhabditis elegans] 0.0
blast CAE68631 Hypothetical protein CBG14519 [Caenorhabditis briggsae] 0.0
blast AAK39255 Hypothetical protein K02G10.3 [Caenorhabditis elegans] ref|NP_508800.2| K02G10.3 [Caenorhabditis elegans] 3.0E-94
blast CAE68631 Hypothetical protein CBG14519 [Caenorhabditis briggsae] 8.0E-76
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508800.2 4 39-61,74-96,102-124,156-178
K02G10.3.1 4 39-61,74-96,102-124,156-178
K02G10.3.2 4 39-61,74-96,102-124,156-178
GENEFINDER00000043404 4 39-61,74-96,102-124,156-178
SNAP00000043392 2 52-74,95-114
Sequence
Target Sequence 
>C. ELEGANS:175553_AT
gttggtggaaagatctcgcttttcaatcgacgtctctacgatcattttggctttgtttct
cgagatgtttacacgaaaattccagaattcgatcctaaatatgcaatgattaatcctatg
ctttacatgccacttgttgaatagttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGGTGGAAAGATCTCGCTTTTCA 437 437 190 Antisense
AGATCTCGCTTTTCAATCGACGTCT 53 67 200 Antisense
CGCTTTTCAATCGACGTCTCTACGA 390 253 206 Antisense
GACGTCTCTACGATCATTTTGGCTT 19 379 218 Antisense
GATCATTTTGGCTTTGTTTCTCGAG 614 419 229 Antisense
GGCTTTGTTTCTCGAGATGTTTACA 496 537 238 Antisense
GAGATGTTTACACGAAAATTCCAGA 544 395 251 Antisense
AAATTCCAGAATTCGATCCTAAATA 33 115 266 Antisense
ATATGCAATGATTAATCCTATGCTT 408 21 288 Antisense
AATCCTATGCTTTACATGCCACTTG 520 167 301 Antisense
ACATGCCACTTGTTGAATAGTTTTT 160 105 314 Antisense
Sequence Source Affymetrix Proprietary Database