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[175552_at] RBB3 like protein

Description AV185282_rc /REP_DB=TREMBL Accession /GB=AV185282 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk676a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 62      6grp_high1_10_10 > 25      4grp_highest_8_8 > 26      4grp_high_8_8 > 62      6grp_highest_nonorm > 70      6grp_total > 26      4grp_total > 59      6grp_highest_sub > Cu      6grp_high1_sub > 01_02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 627
1 2 3 4 range
A 344
(0)
P 		256.7
(-1.1)
P 		574.4
(3)
P 		112.1
(-3)
P 		462
B 399.8
(1.6)
P 		411.2
(1.8)
P 		498.5
(3)
P 		63.1
(-3)
P 		435
C 312.4
(-1)
P 		339
(-0.7)
P 		690
(3)
P 		128.2
(-3)
P 		562
avr 352.1
(0.1) 		335.6
(-0.1) 		587.6
(3) 		101.1
(-3) 		487

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 334
1 2 3 4 5 6 range
A 288.3
(-1.3)
P 		409.6
(3)
P 		263.9
(-2.2)
P 		292.2
(-1.2)
P 		241
(-3)
P 		384
(2.1)
P 		169
B 447.5
(3)
P 		360.6
(1.4)
P 		113.8
(-3)
P 		191.9
(-1.6)
P 		245
(-0.6)
P 		298.9
(0.3)
P 		334
C 421.7
(3)
P 		374.2
(1.5)
P 		231.8
(-3)
P 		291.1
(-1.1)
P 		249.3
(-2.4)
P 		236.5
(-2.9)
P 		190
avr 385.8
(3) 		381.5
(2.9) 		203.2
(-3) 		258.4
(-1.2) 		245.1
(-1.6) 		306.5
(0.4) 		183
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 125.3
(1.9)
P 		55.7
(-1.2)
P 		150.2
(3)
P 		16.4
(-3)
P 		134
B 127.5
(3)
P 		101.6
(1.6)
P 		115.5
(2.4)
P 		13.5
(-3)
P 		114
C 103.4
(-0.8)
P 		97.5
(-0.9)
P 		240.5
(3)
P 		21.6
(-3)
P 		219
avr 118.7
(1) 		84.9
(-0.3) 		168.7
(3) 		17.2
(-3) 		152

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 53.1
(-3)
P 		145.7
(3)
P 		57.5
(-2.7)
P 		74.1
(-1.6)
P 		72.7
(-1.7)
P 		93.5
(-0.4)
P 		93
B 155.7
(3)
P 		120
(1.3)
P 		27.6
(-3)
P 		50.8
(-1.9)
P 		99.5
(0.4)
P 		111.5
(0.9)
P 		128
C 156.3
(3)
P 		114.2
(0.4)
P 		59
(-3)
P 		58.5
(-3)
P 		80.7
(-1.6)
P 		79.2
(-1.7)
P 		98
avr 121.7
(2.6) 		126.6
(3) 		48
(-3) 		61.1
(-2) 		84.3
(-0.2) 		94.7
(0.6) 		79
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175552_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20538
Sequence Type Exemplar sequence
Representative Public ID AV185282 NCBI
Target Description AV185282_rc /REP_DB=TREMBL Accession /GB=AV185282 /CHR=2 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk676a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063370(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063370 NCBI Caenorhabditis elegans F49E12.6 (F49E12.6) mRNA, complete cds. 11/11 None
F49E12.6 ENSEMBL cdna:known chromosome:CEL140:II:8412593:8416755:1 gene:F49E12.6 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:8416414-8416700(+) 100.0 100.0
Public Domain and Genome References
Gene Title RBB3 like protein
Ensembl F49E12.6
Entrez Gene 174341 Entrez gene
SwissProt Q20619 EMBL-EBI
WormBase CE37018 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
74 regulation of progression through cell cycle inferred from electronic annotation QuickGO AmiGO
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5667 transcription factor complex inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA91391 Hypothetical protein F49E12.6 [Caenorhabditis elegans] ref|NP_495771.2| F49E12.6 [Caenorhabditis elegans] 0.0
blast CAE57683 Hypothetical protein CBG00680 [Caenorhabditis briggsae] 0.0
blast XP_539692 PREDICTED: similar to E2F transcription factor 7 [Canis familiaris] 1.0E-26
Protein Domains
Database ID Description E-Value
Pfam IPR003316 EMBL-EBI Transcription factor E2F/dimerisation partner (TDP) 5.4E-5
Sequence
Target Sequence 
>C. ELEGANS:175552_AT
ctacagtaacttcaatccatcttcaacatttctccatttctcatttcccattttctcatg
tatagctagtcccatttctcaatctcttttttcatgtatcattttctctcggtttcagac
tcaccaccattctcaacttttgaattcaattactttcgaaacttaatcattttctcagaa
ttatcatgtagatctttcaatcttaaaaaaatatttttctgcatcttctacactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTACAGTAACTTCAATCCATCTTCA 581 225 13 Antisense
ACTTCAATCCATCTTCAACATTTCT 449 103 21 Antisense
TTCCCATTTTCTCATGTATAGCTAG 576 697 57 Antisense
TGTATAGCTAGTCCCATTTCTCAAT 344 561 71 Antisense
TCAATCTCTTTTTTCATGTATCATT 549 633 91 Antisense
TCATGTATCATTTTCTCTCGGTTTC 588 621 104 Antisense
TATCATTTTCTCTCGGTTTCAGACT 108 659 109 Antisense
CCATTCTCAACTTTTGAATTCAATT 91 271 139 Antisense
TGAATTCAATTACTTTCGAAACTTA 306 575 153 Antisense
GAATTATCATGTAGATCTTTCAATC 399 325 190 Antisense
TATTTTTCTGCATCTTCTACACTAC 162 663 224 Antisense
Sequence Source Affymetrix Proprietary Database