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[175549_s_at] Zinc finger, C2H2 type (5 domains)

Description AU114268_rc /REP_DB=TREMBL Accession /GB=AU114268 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk717b11 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 32      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 51.1
(-3)
A 		54.2
(-2.7)
A 		104.4
(3)
A 		73.3
(-0.5)
A 		53
B 7.9
(-2.9)
A 		7
(-3)
A 		78.5
(3)
A 		76.6
(2.8)
A 		72
C 15.1
(-3)
A 		34.4
(-1.7)
A 		68.3
(0.7)
A 		101.2
(3)
A 		86
avr 24.7
(-3) 		31.9
(-2.3) 		83.7
(3) 		83.7
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 478
1 2 3 4 5 6 range
A 4.7
(-3)
A 		36.1
(-2.6)
A 		69.2
(-2.2)
A 		139.9
(-1.3)
A 		181.4
(-0.8)
P 		481.4
(3)
P 		477
B 52.1
(-2.9)
A 		49.1
(-2.9)
A 		44.2
(-3)
A 		120.3
(-1.7)
P 		232.5
(0.1)
P 		406.3
(3)
P 		362
C 22.5
(-2.7)
A 		3.1
(-3)
A 		108.8
(-1.6)
A 		123
(-1.5)
A 		222
(-0.2)
P 		468.1
(3)
P 		465
avr 26.4
(-3) 		29.4
(-3) 		74.1
(-2.3) 		127.7
(-1.6) 		212
(-0.4) 		451.9
(3) 		426
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 18.6
(-0.1)
A 		11.8
(-2.6)
A 		27.3
(3)
A 		10.7
(-3)
A 		17
B 2.5
(-2.7)
A 		1.7
(-3)
A 		18.2
(3)
A 		16.3
(2.3)
A 		17
C 5
(-3)
A 		9.9
(-1.4)
A 		23.8
(3)
A 		17.1
(0.9)
A 		19
avr 8.7
(-2.6) 		7.8
(-3) 		23.1
(3) 		14.7
(-0.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 0.9
(-3)
A 		12.8
(-2.4)
A 		15.1
(-2.3)
A 		35.5
(-1.2)
A 		54.7
(-0.2)
P 		117.2
(3)
P 		116
B 18.1
(-2.7)
A 		16.3
(-2.8)
A 		10.7
(-3)
A 		31.9
(-2.1)
P 		94.5
(0.6)
P 		151.5
(3)
P 		141
C 8.3
(-2.7)
A 		1
(-3)
A 		27.7
(-2)
A 		24.7
(-2.1)
A 		71.8
(-0.3)
P 		156.7
(3)
P 		156
avr 9.1
(-3) 		10
(-3) 		17.8
(-2.6) 		30.7
(-2) 		73.7
(-0.1) 		141.8
(3) 		133
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175549_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20269
Sequence Type Exemplar sequence
Representative Public ID AU114268 NCBI
Target Description AU114268_rc /REP_DB=TREMBL Accession /GB=AU114268 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk717b11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059651(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059651 NCBI Caenorhabditis elegans R06C7.9 (R06C7.9) mRNA, complete cds. 11/11 A 
SNAP00000036119 ENSEMBL cdna:SNAP chromosome:CEL140:I:7263658:7266752:1 11/11 None
GENEFINDER00000036128 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:7263658:7266752:1 11/11 None
R06C7.9 ENSEMBL cdna:known chromosome:CEL140:I:7263658:7266785:1 gene:R06C7.9 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7266346-7266676(+) 100.0 100.0
Public Domain and Genome References
Gene Title Zinc finger, C2H2 type (5 domains)
Ensembl R06C7.9
Entrez Gene 172470 Entrez gene
SwissProt Q21777 EMBL-EBI
WormBase CE32477 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA95846 Hypothetical protein R06C7.9 [Caenorhabditis elegans] ref|NP_492052.2| R06C7.9 [Caenorhabditis elegans] 0.0
blast CAE74228 Hypothetical protein CBG21912 [Caenorhabditis briggsae] 1.0E-101
blast CAE74228 Hypothetical protein CBG21912 [Caenorhabditis briggsae] 2.0E-36
blast XP_541362 PREDICTED: similar to Zinc finger protein 208 [Canis familiaris] 3.0E-19
Sequence
Target Sequence 
>C. ELEGANS:175549_S_AT
ctcctttcataacctgcaagcgttgtgctcacatcgacacgaatctcacggaaaagaaat
gtttcaatgcaacaactgttctgaaacccttccaaactatcgtgctctccatgatcataa
tatgatgcattgcaggaacaatagatctacaaatgaaacaactacgagaagatattcgga
agaagacatcaattacgattacatggaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTTTCATAACCTGCAAGCGTTG 306 235 20 Antisense
TAACCTGCAAGCGTTGTGCTCACAT 479 637 29 Antisense
GTGCTCACATCGACACGAATCTCAC 591 479 44 Antisense
CATCGACACGAATCTCACGGAAAAG 572 211 51 Antisense
GAAATGTTTCAATGCAACAACTGTT 561 361 75 Antisense
GCAACAACTGTTCTGAAACCCTTCC 298 287 88 Antisense
TCTGAAACCCTTCCAAACTATCGTG 561 601 99 Antisense
CTATCGTGCTCTCCATGATCATAAT 258 225 116 Antisense
GTGCTCTCCATGATCATAATATGAT 396 479 121 Antisense
GATCTACAAATGAAACAACTACGAG 503 419 163 Antisense
GACATCAATTACGATTACATGGACA 387 369 204 Antisense
Sequence Source Affymetrix Proprietary Database