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[175547_at]

Description AV184199_rc /REP_DB=TREMBL Accession /GB=AV184199 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk661d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 58      6grp_high1_10_10 > 96      4grp_highest_8_8 > 54      4grp_high_8_8 > 18      6grp_highest_nonorm > 81      6grp_total > 75      4grp_total > 22      6grp_cgc > 67      6grp_high1_sub > In      6grp_cgc_sub > In      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 303.8
(1)
P 		281.8
(0.4)
P 		160.3
(-3)
P 		374.2
(3)
P 		214
B 317.5
(3)
P 		153.7
(-3)
P 		233.8
(-0.1)
P 		164.2
(-2.6)
P 		164
C 214.9
(0.1)
P 		178.6
(-1.8)
P 		155.5
(-3)
P 		270.4
(3)
P 		115
avr 278.7
(3) 		204.7
(-1.6) 		183.2
(-3) 		269.6
(2.4) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 184
1 2 3 4 5 6 range
A 228.1
(-1)
P 		165.8
(-3)
P 		266.6
(0.3)
P 		220.2
(-1.2)
P 		350.1
(3)
P 		245.7
(-0.4)
P 		184
B 245.2
(-2.1)
P 		230.2
(-3)
P 		330.2
(3)
P 		249.8
(-1.8)
P 		253
(-1.6)
P 		276.9
(-0.2)
P 		100
C 267.5
(-0.2)
P 		199.4
(-3)
P 		213.7
(-2.4)
P 		271.2
(-0)
P 		214.4
(-2.4)
P 		345.1
(3)
P 		146
avr 246.9
(0.2) 		198.5
(-3) 		270.2
(1.7) 		247.1
(0.2) 		272.5
(1.9) 		289.2
(3) 		91
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 110.6
(3)
P 		61.2
(-1.3)
P 		41.9
(-3)
P 		54.8
(-1.9)
P 		69
B 101.3
(3)
P 		38
(-2.7)
P 		54.2
(-1.3)
P 		35
(-3)
P 		66
C 71.1
(3)
P 		51.3
(-1.7)
P 		54.2
(-1)
P 		45.6
(-3)
P 		26
avr 94.3
(3) 		50.2
(-2.4) 		50.1
(-2.4) 		45.1
(-3) 		49

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 74
1 2 3 4 5 6 range
A 42
(-3)
P 		59
(-1.4)
P 		58.1
(-1.5)
P 		55.9
(-1.7)
P 		105.6
(3)
P 		59.8
(-1.3)
P 		64
B 85.3
(0.1)
P 		76.6
(-1.3)
P 		80.2
(-0.7)
P 		66.2
(-3)
P 		102.8
(2.9)
P 		103.2
(3)
P 		37
C 99.2
(1.4)
P 		60.8
(-2.4)
P 		54.4
(-3)
P 		54.5
(-3)
P 		69.4
(-1.5)
P 		115.5
(3)
P 		61
avr 75.5
(-0.1) 		65.5
(-1.8) 		64.2
(-2.1) 		58.9
(-3) 		92.6
(3) 		92.8
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175547_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20369
Sequence Type Exemplar sequence
Representative Public ID AV184199 NCBI
Target Description AV184199_rc /REP_DB=TREMBL Accession /GB=AV184199 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk661d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059348(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059348 NCBI Caenorhabditis elegans ARI (ubiquitin ligase Ariadne) homolog family member (ari-1) (ari-1) mRNA, complete cds. 11/11 A 
C27A12.8.1 ENSEMBL cdna:known chromosome:CEL140:I:6066688:6069088:-1 gene:C27A12.8 11/11 None
C27A12.8.2 ENSEMBL cdna:known chromosome:CEL140:I:6066691:6069168:-1 gene:C27A12.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016773 2/11 Cross Hyb Matching Probes None
GENEFINDER00000016785 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6066753-6067033(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ari-1
Ensembl C27A12.8
Entrez Gene 172284 Entrez gene
SwissProt O01965 EMBL-EBI
WormBase CE29680 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1588312_AT similar to Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme E2-binding protein 1) (UbcH7-binding protein) (UbcM4-interacting protein 77) cfa
CANINE_2:CFA.13216.1.S1_S_AT similar to Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme E2-binding protein 1) (UbcH7-binding protein) (UbcM4-interacting protein 77) cfa
CANINE_2:CFA.2642.1.A1_AT similar to Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme E2-binding protein 1) (UbcH7-binding protein) (UbcM4-interacting protein 77) cfa
CANINE_2:CFAAFFX.27113.1.S1_AT similar to Ariadne-1 protein homolog (ARI-1) (Ubiquitin-conjugating enzyme E2-binding protein 1) (UbcH7-binding protein) (UbcM4-interacting protein 77) cfa
DROSOPHILA_2:1628016_S_AT ariadne dm
DROSGENOME1:143887_AT ariadne dm
CHICKEN:GGAAFFX.25219.1.S1_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) gga
CHICKEN:GGAAFFX.25326.1.S1_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) gga
HG-U133A:201881_S_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133_PLUS_2:201881_S_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133A_2:201881_S_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133A:201878_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133_PLUS_2:201878_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133A_2:201878_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133A:201879_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133A_2:201879_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133_PLUS_2:201879_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBB:RC_Z41271_S_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBD:RC_AA188618_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBD:RC_AA598462_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:G9966762_3P_A_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:HS.181461.0.S3_3P_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:HS.181461.0.S2_3P_AT ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-FOCUS:201880_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133A:201880_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133A_2:201880_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133_PLUS_2:201880_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133_PLUS_2:234327_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133B:234327_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBA:RC_AA412122_I_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBA:AA252940_S_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBC:RC_AA281636_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:HS2.429284.1.S1_3P_X_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:HS.181461.1.A1_3P_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:HS.181461.0.S4_3P_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:1558710_3P_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133_PLUS_2:1558710_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U95AV2:41729_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U95B:44321_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133_PLUS_2:242431_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U133B:242431_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U95C:58631_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U95C:66354_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U95E:69310_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HG-U95D:87874_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBA:W27256_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBB:RC_H19480_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
HU35KSUBB:RC_H48467_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
U133_X3P:HS.196881.0.A1_3P_AT Ariadne homolog, ubiquitin-conjugating enzyme E2 binding protein, 1 (Drosophila) hs
MU11KSUBA:AA174485_S_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MG-U74AV2:104046_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MG-U74AV2:95563_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MG-U74CV2:136033_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOE430A:1427188_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOUSE430A_2:1427188_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOUSE430_2:1427188_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOE430A:1436498_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOUSE430A_2:1436498_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOUSE430_2:1436498_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOE430A:1427189_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOUSE430A_2:1427189_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOUSE430_2:1427189_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOE430B:1441022_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOUSE430_2:1441022_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) mm
MOE430B:1442730_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MOUSE430_2:1442730_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MOE430B:1459397_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MOUSE430_2:1459397_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MOUSE430_2:1439165_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MOE430B:1439165_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MOE430B:1460090_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MOUSE430_2:1460090_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MU19KSUBB:TC32597_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MU19KSUBC:TC39853_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
MU19KSUBC:TC41505_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila), mRNA (cDNA clone MGC:47121 IMAGE:4035861) mm
RG-U34C:RC_AI231433_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAE230A:1375973_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAT230_2:1375973_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAE230A:1375595_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAT230_2:1375595_AT ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAE230A:1374823_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAT230_2:1374823_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAE230B:1382306_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAT230_2:1382306_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAE230A:1389831_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAT230_2:1389831_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAE230B:1392985_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RAT230_2:1392985_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RG-U34B:RC_AA901067_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
RG-U34C:RC_AI101226_AT Ariadne ubiquitin-conjugating enzyme E2 binding protein homolog 1 (Drosophila) (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAB93645 Hypothetical protein C27A12.8 [Caenorhabditis elegans] ref|NP_491749.2| ARI (ubiquitin ligase Ariadne) homolog family member (ari-1) [Caenorhabditis elegans] 0.0
blast CAE72928 Hypothetical protein CBG20248 [Caenorhabditis briggsae] 0.0
blast AAB93643 Hypothetical protein C27A12.6 [Caenorhabditis elegans] ref|NP_491747.1| C27A12.6 [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002867 EMBL-EBI Zn-finger, cysteine-rich C6HC 8.9E-31
Sequence
Target Sequence 
>C. ELEGANS:175547_AT
ttgttccgaaggagctgatcaagaactttgggttttcaacgagtaattatttttttgacc
aacatattattagtatactttttgtaaaatttttttattgttttgtagattattttttcc
aaattcgattctttcaatcagtttaactgtctaccctacttgtctgtatgttcatttcct
gtcatttaccatcacaatccttgtgctctcagatgttttttttcttttcggcctaaaaca
tttatgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTCCGAAGGAGCTGATCAAGAA 189 705 13 Antisense
GATCAAGAACTTTGGGTTTTCAACG 405 421 29 Antisense
GAGTAATTATTTTTTTGACCAACAT 66 399 53 Antisense
TTTTTCCAAATTCGATTCTTTCAAT 653 673 126 Antisense
ATCAGTTTAACTGTCTACCCTACTT 662 27 149 Antisense
CTACCCTACTTGTCTGTATGTTCAT 472 225 163 Antisense
GTATGTTCATTTCCTGTCATTTACC 260 455 178 Antisense
CTGTCATTTACCATCACAATCCTTG 221 239 191 Antisense
CACAATCCTTGTGCTCTCAGATGTT 129 195 205 Antisense
GCTCTCAGATGTTTTTTTTCTTTTC 239 301 217 Antisense
TCTTTTCGGCCTAAAACATTTATGT 430 615 235 Antisense
Sequence Source Affymetrix Proprietary Database