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[175546_at]

Description AV183949_rc /REP_DB=TREMBL Accession /GB=AV183949 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658c10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 40      6grp_total > 16      4grp_total > 22      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1107
1 2 3 4 range
A 1141.8
(3)
P 		368
(-3)
P 		384.3
(-2.9)
P 		997.5
(1.9)
P 		774
B 900
(-0.1)
P 		625.4
(-1.6)
P 		366
(-3)
P 		1473.3
(3)
P 		1107
C 1301
(3)
P 		553.1
(-2.1)
P 		420.5
(-3)
P 		1015
(1.1)
P 		881
avr 1114.3
(2.6) 		515.5
(-2) 		390.3
(-3) 		1161.9
(3) 		772

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 888
1 2 3 4 5 6 range
A 1103
(3)
P 		824.5
(0.7)
P 		494.3
(-1.9)
P 		362.1
(-3)
P 		523
(-1.7)
P 		426.3
(-2.5)
P 		741
B 1249.7
(3)
P 		864.1
(0.3)
P 		489.8
(-2.3)
P 		551.3
(-1.9)
P 		390.9
(-3)
P 		473.9
(-2.4)
P 		859
C 1238.6
(3)
P 		907.2
(0.5)
P 		473.8
(-2.7)
P 		443.3
(-2.9)
P 		539
(-2.2)
P 		435.7
(-3)
P 		803
avr 1197.1
(3) 		865.3
(0.4) 		486
(-2.7) 		452.2
(-2.9) 		484.3
(-2.7) 		445.3
(-3) 		752
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 351
1 2 3 4 range
A 415.7
(3)
P 		79.9
(-3)
P 		100.5
(-2.6)
P 		146
(-1.8)
P 		336
B 287
(2.3)
P 		154.5
(-1.2)
P 		84.8
(-3)
P 		314
(3)
P 		229
C 430.7
(3)
P 		159
(-2.7)
P 		146.6
(-3)
P 		171.1
(-2.5)
P 		284
avr 377.8
(3) 		131.1
(-2.5) 		110.6
(-3) 		210.4
(-0.8) 		267

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 370
1 2 3 4 5 6 range
A 203.3
(0.3)
P 		293.2
(3)
P 		107.6
(-2.5)
P 		91.8
(-3)
P 		157.8
(-1)
P 		103.8
(-2.6)
P 		201
B 434.8
(3)
P 		287.6
(0.2)
P 		118.9
(-3)
P 		146
(-2.5)
P 		158.8
(-2.2)
P 		176.7
(-1.9)
P 		316
C 459.1
(3)
P 		276.8
(0)
P 		120.6
(-2.5)
P 		89.2
(-3)
P 		174.4
(-1.6)
P 		145.8
(-2.1)
P 		370
avr 365.7
(3) 		285.9
(1.1) 		115.7
(-2.8) 		109
(-3) 		163.7
(-1.7) 		142.1
(-2.2) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175546_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20273
Sequence Type Exemplar sequence
Representative Public ID AV183949 NCBI
Target Description AV183949_rc /REP_DB=TREMBL Accession /GB=AV183949 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk658c10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060629(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060629 NCBI Caenorhabditis elegans R06C1.6 (R06C1.6) mRNA, complete cds. 11/11 None
R06C1.6 ENSEMBL cdna:known chromosome:CEL140:I:11955123:11961222:1 gene:R06C1.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000000698 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11960842-11961122(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R06C1.6
Entrez Gene 173077 Entrez gene
SwissProt O62338 EMBL-EBI
WormBase CE37541 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03223 Hypothetical protein R06C1.6 [Caenorhabditis elegans] emb|CAD45609.2| Hypothetical protein R06C1.6 [Caenorhabditis elegans] ref|NP_493030.3| R06C1.6 [Caenorhabditis elegans] 0.0
blast CAE71721 Hypothetical protein CBG18698 [Caenorhabditis briggsae] 1.0E-103
Sequence
Target Sequence 
>C. ELEGANS:175546_AT
aaatgcgcgtcgcaattccagacgtcgctcagcaataaatttttttcaaaaaaaattcat
ttttcctccaagtcttcctctcattttcagctcgaagatctctcttgttttttggtctgg
aaatttctttgaaaatctcaaatttgtatcactacagtaactccccaatgatgttccttt
aaactagtctactgtagttgtct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGCGCGTCGCAATTCCAGACGT 384 119 18 Antisense
ATTCCAGACGTCGCTCAGCAATAAA 253 7 32 Antisense
TCTTCCTCTCATTTTCAGCTCGAAG 539 617 90 Antisense
ATTTTCAGCTCGAAGATCTCTCTTG 321 15 100 Antisense
GATCTCTCTTGTTTTTTGGTCTGGA 536 419 114 Antisense
CTCTCTTGTTTTTTGGTCTGGAAAT 164 229 117 Antisense
GAAAATCTCAAATTTGTATCACTAC 532 353 148 Antisense
TGTATCACTACAGTAACTCCCCAAT 255 561 162 Antisense
GTAACTCCCCAATGATGTTCCTTTA 615 461 174 Antisense
GATGTTCCTTTAAACTAGTCTACTG 563 409 187 Antisense
TTAAACTAGTCTACTGTAGTTGTCT 599 681 196 Antisense
Sequence Source Affymetrix Proprietary Database