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[175545_at]

Description AV176402_rc /REP_DB=TREMBL Accession /GB=AV176402 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk512h10 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 03      6grp_total > 07      4grp_total > 12      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 149
1 2 3 4 range
A 134.2
(0.8)
P 		67.7
(-3)
P 		88.3
(-1.8)
A 		172.5
(3)
P 		105
B 101.4
(2)
P 		85.6
(-2.3)
A 		83.2
(-3)
P 		105
(3)
P 		22
C 94.5
(-1.5)
P 		120.2
(-0.5)
A 		57.8
(-3)
P 		206.3
(3)
P 		149
avr 110
(-0.6) 		91.2
(-2) 		76.4
(-3) 		161.3
(3) 		85

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 167
1 2 3 4 5 6 range
A 177.1
(3)
P 		92.2
(-0.6)
P 		74.8
(-1.4)
P 		36.9
(-3)
A 		116.5
(0.4)
P 		54.3
(-2.3)
P 		140
B 131.5
(3)
P 		100.4
(0.6)
P 		95.7
(0.2)
M 		54.2
(-2.9)
A 		71.9
(-1.6)
P 		53.5
(-3)
A 		78
C 97.8
(1)
P 		99
(1)
P 		9.9
(-3)
A 		143.1
(3)
P 		58.3
(-0.8)
P 		72.8
(-0.2)
P 		133
avr 135.5
(3) 		97.2
(-0) 		60.1
(-3) 		78.1
(-1.6) 		82.2
(-1.2) 		60.2
(-3) 		75
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 34
1 2 3 4 range
A 48.9
(3)
P 		14.7
(-3)
P 		23.1
(-1.5)
A 		25.3
(-1.1)
P 		34
B 32.3
(3)
P 		21.1
(-2.2)
A 		19.3
(-3)
P 		22.4
(-1.6)
P 		13
C 31.3
(1.6)
P 		34.6
(2.9)
A 		20.2
(-3)
P 		34.8
(3)
P 		15
avr 37.5
(3) 		23.5
(-2.1) 		20.9
(-3) 		27.5
(-0.6) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 32.6
(2.4)
P 		32.8
(2.4)
P 		16.3
(-1.4)
P 		9.3
(-3)
A 		35.2
(3)
P 		13.2
(-2.1)
P 		26
B 45.8
(3)
P 		33.4
(0.6)
P 		23.2
(-1.3)
M 		14.4
(-3)
A 		29.2
(-0.2)
P 		20
(-1.9)
A 		31
C 36.3
(3)
P 		30.2
(1.9)
P 		2.5
(-3)
A 		28.8
(1.7)
P 		18.9
(-0.1)
P 		24.4
(0.9)
P 		34
avr 38.2
(3) 		32.1
(1.5) 		14
(-3) 		17.5
(-2.1) 		27.8
(0.4) 		19.2
(-1.7) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175545_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21995
Sequence Type Exemplar sequence
Representative Public ID AV176402 NCBI
Target Description AV176402_rc /REP_DB=TREMBL Accession /GB=AV176402 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk512h10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV176402
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV176402 AV176402_rc /REP_DB=TREMBL Accession /GB=AV176402 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk512h10 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2531031-2531312(+) 47.33 100.0
chrV:2422752-2423033(+) 47.33 100.0
Sequence
Target Sequence 
>C. ELEGANS:175545_AT
ttctatccaagttttttccttcacactatttccctctctctcccccatgaatcacgggtt
cccacacacacgtggtgccaggtcgtcccatcacggtttgatctacaaaaaatgcgggaa
ttttttttgtgacgtcagcacactcttaaccatgcgaaatcagttttccgcaattcttgg
agatcaaaccgaatagggactttctgagaccatatgcacacaccta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCTATCCAAGTTTTTTCCTTCACA 384 691 38 Antisense
TCCAAGTTTTTTCCTTCACACTATT 553 587 43 Antisense
GGGAATTTTTTTTGTGACGTCAGCA 634 493 153 Antisense
TTTGTGACGTCAGCACACTCTTAAC 299 665 163 Antisense
GTCAGCACACTCTTAACCATGCGAA 592 465 171 Antisense
CACACTCTTAACCATGCGAAATCAG 544 183 176 Antisense
TAACCATGCGAAATCAGTTTTCCGC 254 639 184 Antisense
CAGTTTTCCGCAATTCTTGGAGATC 109 207 198 Antisense
GGAGATCAAACCGAATAGGGACTTT 120 503 216 Antisense
AGGGACTTTCTGAGACCATATGCAC 168 59 232 Antisense
TTCTGAGACCATATGCACACACCTA 171 695 239 Antisense
Sequence Source Affymetrix Proprietary Database