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[175544_at] casein kinase like

Description AV178162_rc /REP_DB=TREMBL Accession /GB=AV178162 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561b10 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 82      6grp_total > 36      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 165
1 2 3 4 range
A 352.5
(3)
P 		225.3
(-3)
P 		231
(-2.7)
P 		236.8
(-2.5)
P 		127
B 371.7
(3)
P 		206.6
(-3)
P 		209.8
(-2.9)
P 		364.9
(2.8)
P 		165
C 319.3
(3)
P 		286.4
(1)
P 		221.9
(-3)
P 		315.4
(2.8)
P 		97
avr 347.8
(3) 		239.4
(-2.1) 		220.9
(-3) 		305.7
(1) 		127

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 458.4
(3)
P 		255.1
(-2.4)
P 		380.6
(0.9)
P 		232.1
(-3)
P 		316.2
(-0.8)
P 		310.5
(-0.9)
P 		226
B 424.8
(2.2)
P 		454.9
(3)
P 		338.8
(-0.3)
P 		340.6
(-0.2)
P 		242.4
(-3)
P 		420.3
(2)
P 		213
C 357.4
(0.8)
P 		461.7
(3)
P 		280.6
(-0.8)
P 		282.9
(-0.7)
P 		172.3
(-3)
P 		421.4
(2.2)
P 		289
avr 413.5
(3) 		390.6
(2.2) 		333.3
(0.2) 		285.2
(-1.5) 		243.6
(-3) 		384.1
(2) 		170
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 94
1 2 3 4 range
A 128.3
(3)
P 		48.9
(-2.1)
P 		60.4
(-1.4)
P 		34.7
(-3)
P 		94
B 118.5
(3)
P 		51
(-2.8)
P 		48.6
(-3)
P 		77.8
(-0.5)
P 		70
C 105.7
(3)
P 		82.3
(0.3)
P 		77.3
(-0.2)
P 		53.2
(-3)
P 		53
avr 117.5
(3) 		60.7
(-2.5) 		62.1
(-2.3) 		55.2
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 101
1 2 3 4 5 6 range
A 84.5
(1.2)
P 		90.7
(2.2)
P 		82.9
(0.9)
P 		58.9
(-3)
P 		95.4
(3)
P 		75.6
(-0.3)
P 		37
B 147.8
(2.3)
P 		151.4
(2.6)
P 		82.3
(-3)
P 		90.2
(-2.4)
P 		98.5
(-1.7)
P 		156.7
(3)
P 		74
C 132.5
(2.4)
P 		140.9
(3)
P 		71.4
(-1.9)
P 		56.9
(-2.9)
P 		55.8
(-3)
P 		141.1
(3)
P 		85
avr 121.6
(2.4) 		127.7
(3) 		78.9
(-2) 		68.7
(-3) 		83.2
(-1.5) 		124.5
(2.7) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175544_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20404
Sequence Type Exemplar sequence
Representative Public ID AV178162 NCBI
Target Description AV178162_rc /REP_DB=TREMBL Accession /GB=AV178162 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk561b10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060293(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060293 NCBI Caenorhabditis elegans Y106G6E.6 (Y106G6E.6) mRNA, complete cds. 11/11 None
Y106G6E.6.2 ENSEMBL cdna:known chromosome:CEL140:I:10235348:10239335:-1 gene:Y106G6E.6 11/11 None
Y106G6E.6.1 ENSEMBL cdna:known chromosome:CEL140:I:10235348:10239337:-1 gene:Y106G6E.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:10235884-10236164(-) 100.0 100.0
Public Domain and Genome References
Gene Title casein kinase like
Ensembl Y106G6E.6
Entrez Gene 172891 Entrez gene
SwissProt Q8WQ99 EMBL-EBI
WormBase CE29604 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.18620.1.S1_S_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1778.1.S1_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1779.1.S1_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1779.1.S1_S_AT similar to casein kinase 1, gamma 3 cfa
CANINE_2:CFAAFFX.1781.1.S1_AT similar to casein kinase 1, gamma 3 cfa
DROSOPHILA_2:1626805_S_AT gilgamesh dm
DROSGENOME1:154428_AT gilgamesh dm
HG-U133_PLUS_2:220768_S_AT casein kinase 1, gamma 3 hs
HG-U133A_2:220768_S_AT casein kinase 1, gamma 3 hs
HG-U133A:220768_S_AT casein kinase 1, gamma 3 hs
HG-FOCUS:220768_S_AT casein kinase 1, gamma 3 hs
HU35KSUBA:RC_AA417569_F_AT casein kinase 1, gamma 3 hs
HU35KSUBA:RC_AA417569_I_AT casein kinase 1, gamma 3 hs
HU35KSUBD:RC_AA398116_AT casein kinase 1, gamma 3 hs
U133_X3P:G4758079_3P_A_AT casein kinase 1, gamma 3 hs
U133_X3P:HS.30164.0.S1_3P_AT casein kinase 1, gamma 3 hs
U133_X3P:HS.164004.0.A1_3P_AT casein kinase 1, gamma 3 hs
HG-U133_PLUS_2:227767_AT casein kinase 1, gamma 3 hs
HG-U133B:227767_AT casein kinase 1, gamma 3 hs
HG-U133_PLUS_2:229702_AT casein kinase 1, gamma 3 hs
HG-U133B:229702_AT casein kinase 1, gamma 3 hs
HG-U95C:55901_AT casein kinase 1, gamma 3 hs
HG-U95C:61660_AT casein kinase 1, gamma 3 hs
HG-U95E:75730_AT casein kinase 1, gamma 3 hs
HG-U95E:87730_AT casein kinase 1, gamma 3 hs
HG-U95E:67970_AT Casein kinase 1, gamma 3 hs
HG-U95E:74434_AT Casein kinase 1, gamma 3 hs
HU35KSUBC:RC_H78783_AT Casein kinase 1, gamma 3 hs
RG-U34A:U22321_AT casein kinase 1, gamma 3 rn
RAE230A:1368850_AT casein kinase 1, gamma 3 rn
RAT230_2:1368850_AT casein kinase 1, gamma 3 rn
RAE230A:1368849_AT casein kinase 1, gamma 3 rn
RAT230_2:1368849_AT casein kinase 1, gamma 3 rn
RAE230A:1372582_AT Casein kinase 1, gamma 3 rn
RAT230_2:1372582_AT Casein kinase 1, gamma 3 rn
RG-U34C:RC_AI178699_AT Casein kinase 1, gamma 3 rn
YEAST_2:1774324_AT Palmitoylated, plasma membrane-bound casein kinase I isoform; shares redundant functions with Yck2p in morphogenesis, proper septin assembly, endocytic trafficking; provides an essential function overlapping with that of Yck2p Sc
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6468 protein amino acid phosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4672 protein kinase activity inferred from electronic annotation QuickGO AmiGO
4674 protein serine/threonine kinase activity inferred from electronic annotation QuickGO AmiGO
4713 protein-tyrosine kinase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB60309 Hypothetical protein Y106G6E.6 [Caenorhabditis elegans] ref|NP_492694.1| Y106G6E.6 [Caenorhabditis elegans] 0.0
blast CAE66844 Hypothetical protein CBG12215 [Caenorhabditis briggsae] 0.0
blast XP_779900 PREDICTED: similar to casein kinase 1, gamma 3 isoform 1 [Strongylocentrotus purpuratus] 1.0E-149
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 2.6E-33
Sequence
Target Sequence 
>C. ELEGANS:175544_AT
catttccgtatctgtgatgattcaaagtgtgtgcaccaagacgactttctttctttgctc
ttcttttttttataattttattcattcttctatttcaagaaaggttgctcccccgtcttc
aggtacacatttgtttattgtttgtttcttttctattcattttcgataattttctactcc
tcttctagttgctcacactgatgcacatccgatatagttcgaaatggagaaactcttcct
tcaggaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTTCCGTATCTGTGATGATTCAA 81 215 14 Antisense
AGTGTGTGCACCAAGACGACTTTCT 578 55 39 Antisense
CAAGACGACTTTCTTTCTTTGCTCT 195 183 50 Antisense
TTATAATTTTATTCATTCTTCTATT 97 681 83 Antisense
TATTTCAAGAAAGGTTGCTCCCCCG 12 663 104 Antisense
CCCGTCTTCAGGTACACATTTGTTT 484 259 125 Antisense
GTTTCTTTTCTATTCATTTTCGATA 149 451 157 Antisense
TTTTCGATAATTTTCTACTCCTCTT 510 677 173 Antisense
CTCTTCTAGTTGCTCACACTGATGC 694 229 193 Antisense
ACTGATGCACATCCGATATAGTTCG 707 97 210 Antisense
ATGGAGAAACTCTTCCTTCAGGAAT 480 49 237 Antisense
Sequence Source Affymetrix Proprietary Database