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[175543_at]

Description AV177832_rc /REP_DB=TREMBL Accession /GB=AV177832 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534e12 : 3prime end, single read.
Cluster 6grp_total > 40      4grp_total > 23      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 36.9
(0.8)
A 		17.4
(-3)
A 		26.7
(-1.2)
A 		48
(3)
A 		31
B 41.3
(0.2)
A 		65.4
(3)
A 		44.6
(0.6)
A 		14
(-3)
A 		51
C 90.5
(2.3)
A 		16.7
(-3)
A 		33.8
(-1.8)
A 		99.9
(3)
P 		83
avr 56.2
(3) 		33.2
(-3) 		35
(-2.5) 		54
(2.4) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 193
1 2 3 4 5 6 range
A 90.5
(2.3)
A 		101.8
(3)
A 		93.6
(2.5)
P 		48.5
(-0.5)
A 		46
(-0.7)
A 		10.5
(-3)
A 		91
B 33.9
(-1.4)
A 		90.3
(2.1)
A 		69.1
(0.8)
P 		104.3
(3)
A 		37.7
(-1.1)
A 		7.7
(-3)
A 		97
C 48.9
(-2.9)
A 		87.2
(-1.4)
P 		85.3
(-1.5)
A 		200.2
(3)
A 		72
(-2)
A 		45.5
(-3)
A 		155
avr 57.8
(-0.7) 		93.1
(1.5) 		82.7
(0.8) 		117.7
(3) 		51.9
(-1.1) 		21.2
(-3) 		97
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 13.5
(3)
A 		3.8
(-3)
A 		7
(-1)
A 		7
(-1)
A 		10
B 13.2
(1.6)
A 		16.2
(3)
A 		10.3
(0.3)
A 		3
(-3)
A 		13
C 30
(3)
A 		4.8
(-3)
A 		11.8
(-1.3)
A 		16.8
(-0.1)
P 		25
avr 18.9
(3) 		8.3
(-3) 		9.7
(-2.2) 		8.9
(-2.7) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 38
1 2 3 4 5 6 range
A 16.7
(-0.5)
A 		36.2
(3)
A 		20.4
(0.2)
P 		12.3
(-1.3)
A 		13.9
(-1)
A 		2.6
(-3)
A 		34
B 11.8
(-1)
A 		30
(3)
A 		16.8
(0.1)
P 		27.6
(2.5)
A 		15.3
(-0.3)
A 		2.9
(-3)
A 		27
C 18.1
(-2.3)
A 		26.6
(-0.3)
P 		21.7
(-1.4)
A 		40.3
(3)
A 		23.3
(-1.1)
A 		15.2
(-3)
A 		25
avr 15.5
(-0.9) 		30.9
(3) 		19.6
(0.2) 		26.7
(2) 		17.5
(-0.4) 		6.9
(-3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175543_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21916
Sequence Type Exemplar sequence
Representative Public ID AV177832 NCBI
Target Description AV177832_rc /REP_DB=TREMBL Accession /GB=AV177832 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV177832
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV177832 AV177832_rc /REP_DB=TREMBL Accession /GB=AV177832 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk534e12 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:18786741-18787403(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175543_AT
taggtaacaggttcaagccccctgcggggtatataggtttttaaccaaattttctgcccc
tttttcctcctttatggaacattctggagttttttgcaagtttttttagaatttttagtg
ttagaaaaaccattacaccattaaaccgttaaaattgtgtccgtatctttcaaatttcag
aattatccacaatcagctgtcgtgcaaaacga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAGGTAACAGGTTCAAGCCCCCTGC 436 651 38 Antisense
GTTCAAGCCCCCTGCGGGGTATATA 551 423 48 Antisense
CAAGCCCCCTGCGGGGTATATAGGT 708 185 51 Antisense
TTTTTCCTCCTTTATGGAACATTCT 234 675 98 Antisense
GGAACATTCTGGAGTTTTTTGCAAG 353 529 113 Antisense
CATTCTGGAGTTTTTTGCAAGTTTT 592 215 117 Antisense
TGTTAGAAAAACCATTACACCATTA 209 557 156 Antisense
GTTAAAATTGTGTCCGTATCTTTCA 500 445 185 Antisense
GTGTCCGTATCTTTCAAATTTCAGA 675 487 194 Antisense
ATTATCCACAATCAGCTGTCGTGCA 75 13 219 Antisense
CACAATCAGCTGTCGTGCAAAACGA 512 193 225 Antisense
Sequence Source Affymetrix Proprietary Database