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[175542_at]

Description AU115595_rc /REP_DB=TREMBL Accession /GB=AU115595 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734e11 : 3prime end, single read.
Cluster 6grp_total > 97      4grp_total > 02      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 243
1 2 3 4 range
A 3
(-3)
A 		12
(-2.7)
A 		10.7
(-2.8)
A 		197.6
(3)
A 		195
B 3.8
(-3)
A 		18.4
(-2.5)
A 		3.2
(-3)
A 		191.3
(3)
P 		188
C 4.7
(-3)
A 		10.6
(-2.9)
A 		20.1
(-2.6)
A 		246
(3)
A 		241
avr 3.8
(-3) 		13.7
(-2.7) 		11.3
(-2.8) 		211.6
(3) 		208

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 373
1 2 3 4 5 6 range
A 10.1
(-3)
A 		21.6
(-2.8)
A 		74.9
(-1.8)
A 		92.4
(-1.5)
A 		247.9
(1.3)
A 		343.1
(3)
P 		333
B 6.2
(-3)
A 		14.3
(-2.9)
A 		37.7
(-2.5)
A 		99.8
(-1.4)
A 		237.4
(0.9)
P 		363.6
(3)
P 		357
C 7.4
(-3)
A 		8.2
(-3)
A 		9
(-3)
A 		78.9
(-1.8)
A 		215
(0.3)
P 		379.6
(3)
P 		372
avr 7.9
(-3) 		14.7
(-2.9) 		40.5
(-2.4) 		90.4
(-1.6) 		233.4
(0.8) 		362.1
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 1.1
(-3)
A 		2.6
(-2.7)
A 		2.8
(-2.6)
A 		28.9
(3)
A 		28
B 1.2
(-2.9)
A 		4.5
(-2.4)
A 		0.7
(-3)
A 		40.8
(3)
P 		40
C 1.6
(-3)
A 		3
(-2.8)
A 		7
(-2.2)
A 		41.5
(3)
A 		40
avr 1.3
(-3) 		3.4
(-2.6) 		3.5
(-2.6) 		37.1
(3) 		36

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 134
1 2 3 4 5 6 range
A 1.9
(-3)
A 		7.7
(-2.6)
A 		16.3
(-1.9)
A 		23.4
(-1.4)
A 		74.8
(2.4)
A 		83.5
(3)
P 		82
B 2.2
(-3)
A 		4.8
(-2.9)
A 		9.1
(-2.7)
A 		26.4
(-1.9)
A 		96.5
(1.2)
P 		135.6
(3)
P 		133
C 2.7
(-3)
A 		2.5
(-3)
A 		2.3
(-3)
A 		15.9
(-2.3)
A 		69.6
(0.2)
P 		127.1
(3)
P 		125
avr 2.3
(-3) 		5
(-2.9) 		9.2
(-2.6) 		21.9
(-2) 		80.3
(1.1) 		115.4
(3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175542_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20221
Sequence Type Exemplar sequence
Representative Public ID AU115595 NCBI
Target Description AU115595_rc /REP_DB=TREMBL Accession /GB=AU115595 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk734e11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060941(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060941 NCBI Caenorhabditis elegans T04D3.8 (T04D3.8) mRNA, complete cds. 11/11 None
T04D3.8 ENSEMBL cdna:known chromosome:CEL140:I:13318113:13318769:1 gene:T04D3.8 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000016261 6/11 Cross Hyb Matching Probes None
GENEFINDER00000016271 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:13318119-13318690(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T04D3.8
Entrez Gene 173199 Entrez gene
SwissProt Q95ZQ2 EMBL-EBI
WormBase CE27434 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC42332 Hypothetical protein T04D3.8 [Caenorhabditis elegans] ref|NP_493342.1| T04D3.8 [Caenorhabditis elegans] 1.0E-44
Sequence
Target Sequence 
>C. ELEGANS:175542_AT
ggtacgcagaagccgttattgcacagaagagaagacagaaggcgatgtccaaattgccat
tcgtcctcaaacctccataccagttccagatgccacgaagaccatcaaatggaccgtaca
ggattcttaaattggtcccaagagattccggaatccgcaccgagttcaagagatctaacc
agcaagcagccaagtgatggactcaatttcgactatttcctgttcctgttaattc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTACGCAGAAGCCGTTATTGCACA 91 505 24 Antisense
GCGATGTCCAAATTGCCATTCGTCC 581 289 65 Antisense
TACCAGTTCCAGATGCCACGAAGAC 325 647 101 Antisense
GACCATCAAATGGACCGTACAGGAT 485 383 123 Antisense
ACAGGATTCTTAAATTGGTCCCAAG 528 95 141 Antisense
TGGTCCCAAGAGATTCCGGAATCCG 45 551 156 Antisense
GAATCCGCACCGAGTTCAAGAGATC 104 331 174 Antisense
AAGAGATCTAACCAGCAAGCAGCCA 233 155 191 Antisense
GCAAGCAGCCAAGTGATGGACTCAA 583 319 205 Antisense
GGACTCAATTTCGACTATTTCCTGT 665 523 222 Antisense
GACTATTTCCTGTTCCTGTTAATTC 92 373 234 Antisense
Sequence Source Affymetrix Proprietary Database