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[175538_at]

Description AU113774_rc /REP_DB=TREMBL Accession /GB=AU113774 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711e12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 12      6grp_total > 33      4grp_total > 50      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 70
1 2 3 4 range
A 22.9
(-3)
A 		40.1
(3)
P 		37.7
(2.2)
A 		23.4
(-2.8)
A 		17
B 32.2
(-0.6)
A 		74.3
(3)
A 		58.3
(1.6)
P 		3.9
(-3)
A 		70
C 28.3
(-2.9)
A 		50.2
(1.5)
A 		57.6
(3)
P 		27.7
(-3)
A 		30
avr 27.8
(-1.4) 		54.9
(3) 		51.2
(2.4) 		18.3
(-3) 		37

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 138
1 2 3 4 5 6 range
A 116.4
(1.2)
M 		96.5
(0.2)
P 		152.4
(3)
P 		34.5
(-3)
P 		45.6
(-2.4)
P 		53.1
(-2.1)
P 		118
B 119.5
(0.1)
P 		109
(-0.4)
P 		172.3
(3)
P 		94.1
(-1.2)
P 		71.3
(-2.5)
P 		61.5
(-3)
P 		111
C 147.3
(2.6)
P 		153
(3)
P 		96.6
(-0.6)
P 		79.9
(-1.6)
M 		83.5
(-1.4)
P 		58.2
(-3)
P 		95
avr 127.7
(2.1) 		119.5
(1.5) 		140.4
(3) 		69.5
(-2.1) 		66.8
(-2.3) 		57.6
(-3) 		83
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 8.3
(1.5)
A 		8.7
(1.9)
P 		9.9
(3)
A 		3.4
(-3)
A 		7
B 10.3
(0.3)
A 		18.3
(3)
A 		13.5
(1.4)
P 		0.8
(-3)
A 		18
C 9.4
(-1.2)
A 		14.4
(0.8)
A 		20.1
(3)
P 		4.7
(-3)
A 		15
avr 9.3
(0.3) 		13.8
(2.6) 		14.5
(3) 		3
(-3) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 21.5
(0)
M 		34.3
(3)
P 		33.2
(2.7)
P 		8.7
(-3)
P 		13.8
(-1.8)
P 		12.9
(-2)
P 		26
B 41.6
(2.9)
P 		36.3
(1.2)
P 		41.9
(3)
P 		24.9
(-2.4)
P 		29
(-1.1)
P 		22.9
(-3)
P 		19
C 54.6
(3)
P 		46.7
(1.8)
P 		24.6
(-1.7)
P 		16.1
(-3)
M 		27
(-1.3)
P 		19.5
(-2.5)
P 		39
avr 39.2
(3) 		39.1
(3) 		33.2
(1.4) 		16.6
(-3) 		23.3
(-1.2) 		18.4
(-2.5) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175538_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21901
Sequence Type Exemplar sequence
Representative Public ID AU113774 NCBI
Target Description AU113774_rc /REP_DB=TREMBL Accession /GB=AU113774 /CHR=5 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk711e12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_074451
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C06B8.2b ENSEMBL cdna:known chromosome:CEL140:V:15478705:15481151:-1 gene:C06B8.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:15478714-15478994(-) 87.5 100.0
Public Domain and Genome References
Ensembl C06B8.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAC70074 Hypothetical protein C06B8.2b [Caenorhabditis elegans] emb|CAC70106.2| Hypothetical protein C06B8.2b [Caenorhabditis elegans] ref|NP_506853.2| C06B8.2b [Caenorhabditis elegans] 0.0
blast CAB03854 Hypothetical protein C06B8.2a [Caenorhabditis elegans] emb|CAB03409.4| Hypothetical protein C06B8.2a [Caenorhabditis elegans] ref|NP_506852.2| C06B8.2a [Caenorhabditis elegans] 0.0
blast NP_503702 Y45G12C.1 [Caenorhabditis elegans] gb|AAF60579.1| Hypothetical protein Y45G12C.1 [Caenorhabditis elegans] 1.0E-153
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
C06B8.2b 1 7-24
Sequence
Target Sequence 
>C. ELEGANS:175538_AT
ctcctggctctactttaacaacgtatatatcggtttatcaattggttttatcattgggtt
tatcaaaaaattgccaactaggaagttacgtaaaattgttttttgatacaacccatgaca
accgaaatttcagccgtcaaagtagagaagtgcaagtccaataggaaaaataccttaatt
tgttgttattctctgctgatgcaatcatatttgtgttgattcaaaccggtatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTGGCTCTACTTTAACAACGTA 257 233 28 Antisense
TAACAACGTATATATCGGTTTATCA 282 639 43 Antisense
TCGGTTTATCAATTGGTTTTATCAT 206 607 57 Antisense
ATTGGTTTTATCATTGGGTTTATCA 559 3 68 Antisense
GTTTTTTGATACAACCCATGACAAC 160 449 125 Antisense
GATACAACCCATGACAACCGAAATT 122 421 132 Antisense
GACAACCGAAATTTCAGCCGTCAAA 641 363 144 Antisense
CGAAATTTCAGCCGTCAAAGTAGAG 707 139 150 Antisense
TGTTGTTATTCTCTGCTGATGCAAT 467 563 208 Antisense
GCTGATGCAATCATATTTGTGTTGA 143 297 222 Antisense
ATTTGTGTTGATTCAAACCGGTATT 601 17 236 Antisense
Sequence Source Affymetrix Proprietary Database