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[175537_at]

Description AV181971_rc /REP_DB=TREMBL Accession /GB=AV181971 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk629a11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 80      6grp_high1_10_10 > 15      4grp_highest_8_8 > 31      4grp_high_8_8 > 04      6grp_highest_nonorm > 03      6grp_total > 06      4grp_total > 04      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6246
1 2 3 4 range
A 2490.3
(-1.3)
P 		1280.8
(-2.6)
P 		943.1
(-3)
P 		6420.2
(3)
P 		5477
B 2306.6
(-1.4)
P 		1145.2
(-2.8)
P 		951.9
(-3)
P 		5986.9
(3)
P 		5035
C 2104.7
(-2)
P 		1189.3
(-2.9)
P 		1117.2
(-3)
P 		7188.9
(3)
P 		6072
avr 2300.5
(-1.6) 		1205.1
(-2.8) 		1004.1
(-3) 		6532
(3) 		5528

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2098
1 2 3 4 5 6 range
A 3608.9
(3)
P 		3026.2
(0)
P 		2426.4
(-3)
P 		2889.4
(-0.7)
P 		2661.6
(-1.8)
P 		2947.7
(-0.4)
P 		1183
B 3128.8
(-0.4)
P 		3811.1
(3)
P 		2660.2
(-2.7)
P 		2929.4
(-1.4)
P 		2603.5
(-3)
P 		2693.7
(-2.6)
P 		1208
C 4350.1
(3)
P 		3347.8
(0.1)
P 		2683.6
(-1.8)
P 		2491.2
(-2.3)
P 		3482.3
(0.5)
P 		2252.1
(-3)
P 		2098
avr 3695.9
(3) 		3395
(1.4) 		2590.1
(-3) 		2770
(-2) 		2915.8
(-1.2) 		2631.2
(-2.8) 		1106
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1055
1 2 3 4 range
A 906.7
(2.7)
P 		278
(-2.7)
P 		246.6
(-3)
P 		939.8
(3)
P 		693
B 735.6
(-0.1)
P 		282.8
(-2.6)
P 		220.6
(-3)
P 		1275.8
(3)
P 		1055
C 696.7
(-0.6)
P 		341.9
(-3)
P 		389.4
(-2.7)
P 		1212.2
(3)
P 		870
avr 779.7
(0.5) 		300.9
(-2.9) 		285.5
(-3) 		1142.6
(3) 		857

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1111
1 2 3 4 5 6 range
A 665.3
(-1.5)
P 		1076.3
(3)
P 		528.4
(-3)
P 		732.8
(-0.8)
P 		803.2
(0)
P 		717.7
(-0.9)
P 		548
B 1088.7
(1.3)
P 		1268.6
(3)
P 		646
(-3)
P 		775.9
(-1.7)
P 		1057.8
(1)
P 		1004.5
(0.5)
P 		623
C 1612.4
(3)
P 		1021.5
(-0.2)
P 		683
(-2)
P 		501
(-3)
P 		1126.8
(0.4)
P 		753.9
(-1.6)
P 		1111
avr 1122.1
(3) 		1122.1
(3) 		619.1
(-3) 		669.9
(-2.4) 		995.9
(1.5) 		825.4
(-0.5) 		503
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175537_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20399
Sequence Type Exemplar sequence
Representative Public ID AV181971 NCBI
Target Description AV181971_rc /REP_DB=TREMBL Accession /GB=AV181971 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk629a11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV181971
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV181971 AV181971_rc /REP_DB=TREMBL Accession /GB=AV181971 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk629a11 : 3prime end, single read. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:12052902-12053181(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175537_AT
ttttcgcgcgagtcgaacctcgatctcccaggttttcgcattccttcccacttttttttc
catcttttttcctgtttcttggctattttttgggaaaagtatcaaatttctctcgcgaaa
tttgcgatttcccgaaaatttgccaactttccactgagattttggcgttttttgcgcatt
tccacctctaccatctgtacggattgcgatttttttcac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCGCGCGAGTCGAACCTCGATC 56 671 31 Antisense
TCCATCTTTTTTCCTGTTTCTTGGC 360 591 89 Antisense
TCTTTTTTCCTGTTTCTTGGCTATT 678 615 93 Antisense
AAAAGTATCAAATTTCTCTCGCGAA 42 133 125 Antisense
CTCTCGCGAAATTTGCGATTTCCCG 295 231 140 Antisense
GCGATTTCCCGAAAATTTGCCAACT 312 287 154 Antisense
AATTTGCCAACTTTCCACTGAGATT 27 175 167 Antisense
ACTTTCCACTGAGATTTTGGCGTTT 674 99 176 Antisense
TTTGGCGTTTTTTGCGCATTTCCAC 67 667 191 Antisense
CTCTACCATCTGTACGGATTGCGAT 496 229 216 Antisense
CTGTACGGATTGCGATTTTTTTCAC 329 219 225 Antisense
Sequence Source Affymetrix Proprietary Database