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[175535_at]

Description AV180884_rc /REP_DB=TREMBL Accession /GB=AV180884 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 98      6grp_high1_10_10 > 88      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 91      6grp_total > 87      4grp_total > 48      6grp_highest_sub > Cu      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 132.8
(-0.9)
P 		119.7
(-3)
P 		157.6
(3)
P 		140.5
(0.3)
P 		38
B 92.9
(-3)
P 		119.6
(3)
P 		112
(1.3)
P 		106.6
(0.1)
P 		27
C 115.5
(-2.1)
P 		138.9
(1.1)
P 		153.4
(3)
P 		108.6
(-3)
P 		45
avr 113.7
(-3) 		126.1
(-0.3) 		141
(3) 		118.6
(-1.9) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 246
1 2 3 4 5 6 range
A 130.2
(-2.4)
P 		111.8
(-3)
P 		123.4
(-2.6)
P 		143.3
(-2)
P 		219.7
(0.3)
P 		308.9
(3)
P 		197
B 186.6
(0.4)
P 		117.9
(-1.5)
P 		63.2
(-3)
P 		195.8
(0.6)
P 		194.6
(0.6)
P 		284.1
(3)
P 		221
C 112.7
(-2.2)
P 		88.8
(-3)
P 		92.8
(-2.9)
P 		114.8
(-2.1)
P 		216.1
(1.4)
P 		261.6
(3)
P 		173
avr 143.2
(-1.4) 		106.2
(-2.6) 		93.1
(-3) 		151.3
(-1.2) 		210.1
(0.7) 		284.9
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 48.4
(3)
P 		26
(-1.8)
P 		41.2
(1.4)
P 		20.6
(-3)
P 		28
B 29.6
(3)
P 		29.6
(3)
P 		26
(-0.1)
P 		22.7
(-3)
P 		7
C 38.2
(0.4)
P 		39.9
(0.7)
P 		53.5
(3)
P 		18.3
(-3)
P 		35
avr 38.7
(2.5) 		31.8
(0.4) 		40.2
(3) 		20.5
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 24
(-3)
P 		39.8
(-1.1)
P 		26.9
(-2.7)
P 		36.3
(-1.6)
P 		66.3
(2)
P 		75.2
(3)
P 		51
B 64.9
(0.3)
P 		39.2
(-1.4)
P 		15.4
(-3)
P 		51.9
(-0.6)
P 		79
(1.2)
P 		105.9
(3)
P 		91
C 41.8
(-1.3)
P 		27.1
(-2.6)
P 		23.6
(-3)
P 		23.1
(-3)
P 		69.9
(1.4)
P 		87.6
(3)
P 		65
avr 43.6
(-1.1) 		35.4
(-1.8) 		22
(-3) 		37.1
(-1.7) 		71.7
(1.4) 		89.6
(3) 		68
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175535_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20228
Sequence Type Exemplar sequence
Representative Public ID AV180884 NCBI
Target Description AV180884_rc /REP_DB=TREMBL Accession /GB=AV180884 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk613d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059363(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059363 NCBI Caenorhabditis elegans T27A3.7 (T27A3.7) mRNA, complete cds. 11/11 None
T27A3.7 ENSEMBL cdna:known chromosome:CEL140:I:6115968:6117790:-1 gene:T27A3.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6116027-6116307(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A3.7
Entrez Gene 172295 Entrez gene
SwissProt P91501 EMBL-EBI
WormBase CE14229 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
20037 heme binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB42300 Hypothetical protein T27A3.7 [Caenorhabditis elegans] ref|NP_491764.1| T27A3.7 [Caenorhabditis elegans] 0.0
blast CAE72951 Hypothetical protein CBG20282 [Caenorhabditis briggsae] 8.0E-90
Sequence
Target Sequence 
>C. ELEGANS:175535_AT
cttttctatcgttttttgtagactggtttttattcctatttctctgcattttaatccgaa
tccatccctcttcactttcctaccttcccacacacgtgtcaaatacctcaccttttccct
ccggttcactgacttttcccacccgcgattttcatcccatttttcatgcatacatcttca
atgaaacattttttagaatgtaattttcccgatataaccacgttttaaatctgaaattgc
t

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTCTATCGTTTTTTGTAGACTG 70 223 18 Antisense
TGTAGACTGGTTTTTATTCCTATTT 162 561 34 Antisense
TCTCTGCATTTTAATCCGAATCCAT 140 613 58 Antisense
TACCTTCCCACACACGTGTCAAATA 164 649 98 Antisense
CACGTGTCAAATACCTCACCTTTTC 530 199 110 Antisense
GCGATTTTCATCCCATTTTTCATGC 435 291 162 Antisense
TTTCATCCCATTTTTCATGCATACA 127 673 167 Antisense
TCCCATTTTTCATGCATACATCTTC 618 597 172 Antisense
CATGCATACATCTTCAATGAAACAT 34 207 182 Antisense
TGTAATTTTCCCGATATAACCACGT 179 559 216 Antisense
ACCACGTTTTAAATCTGAAATTGCT 236 85 234 Antisense
Sequence Source Affymetrix Proprietary Database