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[175534_s_at]

Description AU114359_rc /REP_DB=TREMBL Accession /GB=AU114359 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk717h12 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 05      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 76.4
(-1.5)
A 		71.8
(-1.9)
A 		58.5
(-3)
A 		130.6
(3)
A 		72
B 65
(-1.4)
P 		46.5
(-3)
A 		96.6
(1.3)
P 		115.8
(3)
P 		69
C 100.5
(1.6)
A 		59.7
(-3)
A 		63.6
(-2.6)
P 		113.3
(3)
P 		54
avr 80.6
(-0.9) 		59.3
(-3) 		72.9
(-1.7) 		119.9
(3) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 341
1 2 3 4 5 6 range
A 12.7
(-3)
A 		64.9
(-1.8)
P 		96.7
(-1)
P 		75.3
(-1.5)
P 		169.3
(0.7)
P 		264.2
(3)
P 		252
B 63.9
(-2.5)
A 		42.4
(-3)
A 		104.5
(-1.4)
A 		55.7
(-2.7)
A 		186.1
(0.6)
P 		280.3
(3)
P 		238
C 55
(-3)
A 		95.6
(-2.2)
A 		79.7
(-2.5)
A 		124.3
(-1.6)
M 		133.7
(-1.4)
P 		354.1
(3)
P 		299
avr 43.9
(-3) 		67.6
(-2.4) 		93.6
(-1.8) 		85.1
(-2) 		163
(-0.2) 		299.5
(3) 		256
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 22
1 2 3 4 range
A 27.8
(3)
A 		15.6
(-2.9)
A 		15.3
(-3)
A 		19.1
(-1.2)
A 		13
B 20.7
(1.2)
P 		11.5
(-3)
A 		22.4
(2)
P 		24.7
(3)
P 		13
C 33.3
(3)
A 		17.2
(-3)
A 		22.2
(-1.1)
P 		19.1
(-2.3)
P 		16
avr 27.3
(3) 		14.8
(-3) 		20
(-0.5) 		21
(-0) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 116
1 2 3 4 5 6 range
A 2.3
(-3)
A 		23.1
(-1)
P 		21.1
(-1.2)
P 		19.1
(-1.4)
P 		51.1
(1.7)
P 		64.3
(3)
P 		62
B 22.2
(-2.5)
A 		14.1
(-3)
A 		25.4
(-2.3)
A 		14.8
(-3)
A 		75.6
(1.1)
P 		104.5
(3)
P 		90
C 20.4
(-3)
A 		29.2
(-2.5)
A 		20.3
(-3)
A 		25
(-2.7)
M 		43.3
(-1.6)
P 		118.5
(3)
P 		98
avr 15
(-3) 		22.1
(-2.5) 		22.3
(-2.5) 		19.6
(-2.7) 		56.7
(0.1) 		95.8
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175534_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20276
Sequence Type Exemplar sequence
Representative Public ID AU114359 NCBI
Target Description AU114359_rc /REP_DB=TREMBL Accession /GB=AU114359 /CHR=1 /FEA=Genomic Cluster /DEF=Caenorhabditis elegans cDNA clone:yk717h12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059058(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059058 NCBI Caenorhabditis elegans F57C9.4b (F57C9.4) mRNA, complete cds. 11/11 A 
SNAP00000003851 ENSEMBL cdna:SNAP chromosome:CEL140:I:4833984:4841383:1 10/11 None
GENEFINDER00000003858 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4833984:4835530:1 11/11 None
F57C9.4b ENSEMBL cdna:known chromosome:CEL140:I:4830136:4835619:1 gene:F57C9.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172100 2 1 NM_059058 175534_s_at (11)
NM_059059 175580_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4834863-4835547(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57C9.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73888 Hypothetical protein F57C9.4b [Caenorhabditis elegans] ref|NP_491459.1| F57C9.4b [Caenorhabditis elegans] 0.0
blast AAK73887 Hypothetical protein F57C9.4a [Caenorhabditis elegans] ref|NP_491460.1| F57C9.4a [Caenorhabditis elegans] 0.0
blast T15216 hypothetical protein F57C9.4 - Caenorhabditis elegans 0.0
blast AAK73888 Hypothetical protein F57C9.4b [Caenorhabditis elegans] ref|NP_491459.1| F57C9.4b [Caenorhabditis elegans] 1.0E-122
blast AAK73888 Hypothetical protein F57C9.4b [Caenorhabditis elegans] ref|NP_491459.1| F57C9.4b [Caenorhabditis elegans] 1.0E-114
blast CAE60352 Hypothetical protein CBG03948 [Caenorhabditis briggsae] 1.0E-100
blast CAE60352 Hypothetical protein CBG03948 [Caenorhabditis briggsae] 6.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.5E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.4E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 7.5E-6
Sequence
Target Sequence 
>C. ELEGANS:175534_S_AT
catgcgagcattgcggcaaacgaggacgtcggaattttttgaagacccacattcgaacac
acactggtgaaagaccatacagatgtgacacatgttcgaaatcgttcaccgatgcctcaa
cactgcgtcgccacggacttgtgcacactggtgaaaagaaatatcaatgcccggtgtgtg
gacgagcgattgcacggaaagataacgttaaagctcacattcgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATGCGAGCATTGCGGCAAACGAGG 105 209 13 Antisense
GCGGCAAACGAGGACGTCGGAATTT 456 291 25 Antisense
TCGGAATTTTTTGAAGACCCACATT 302 1 41 Antisense
GACCCACATTCGAACACACACTGGT 513 381 56 Antisense
AACACACACTGGTGAAAGACCATAC 430 133 68 Antisense
GACACATGTTCGAAATCGTTCACCG 279 367 99 Antisense
TCGAAATCGTTCACCGATGCCTCAA 511 601 108 Antisense
CCACGGACTTGTGCACACTGGTGAA 314 275 143 Antisense
ATATCAATGCCCGGTGTGTGGACGA 53 21 173 Antisense
GTGTGGACGAGCGATTGCACGGAAA 608 487 188 Antisense
GATAACGTTAAAGCTCACATTCGAA 468 419 213 Antisense
Sequence Source Affymetrix Proprietary Database