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[175532_at]

Description AV180727_rc /REP_DB=TREMBL Accession /GB=AV180727 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk611d1 : 3prime end, single read.
Cluster 6grp_total > 35      4grp_total > 07      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 60
1 2 3 4 range
A 35.2
(-0.5)
M 		25.9
(-3)
A 		40.1
(0.9)
A 		47.9
(3)
A 		22
B 40.8
(2.5)
M 		39.5
(2.2)
A 		44.1
(3)
A 		7.4
(-3)
A 		37
C 45.2
(-0.4)
A 		28.8
(-2.9)
A 		28.2
(-3)
A 		67.2
(3)
P 		39
avr 40.4
(2.7) 		31.4
(-3) 		37.5
(0.9) 		40.8
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 87
1 2 3 4 5 6 range
A 41.8
(2.8)
A 		15.8
(-1.2)
A 		42.8
(3)
M 		4.5
(-3)
A 		33.4
(1.5)
A 		41.3
(2.8)
A 		38
B 89.8
(3)
P 		67.5
(1.2)
A 		37
(-1.4)
P 		30.3
(-1.9)
A 		36.3
(-1.4)
A 		17.4
(-3)
A 		72
C 8.2
(-2.4)
A 		54.9
(3)
P 		19.2
(-1.1)
A 		4.6
(-2.8)
A 		2.8
(-3)
A 		35.5
(0.8)
A 		52
avr 46.6
(3) 		46.1
(2.9) 		33
(0.6) 		13.1
(-3) 		24.2
(-1) 		31.4
(0.3) 		34
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.8
(3)
M 		5.6
(-3)
A 		10.5
(1.1)
A 		7
(-1.8)
A 		7
B 13
(3)
M 		9.8
(1.3)
A 		10.2
(1.5)
A 		1.6
(-3)
A 		11
C 15
(3)
A 		8.3
(-3)
A 		9.8
(-1.7)
A 		11.3
(-0.3)
P 		7
avr 13.6
(3) 		7.9
(-1.9) 		10.2
(0.1) 		6.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 30
1 2 3 4 5 6 range
A 7.7
(1.4)
A 		5.6
(0)
A 		9.3
(2.5)
M 		1.1
(-3)
A 		10.1
(3)
A 		10
(2.9)
A 		9
B 31.3
(3)
P 		22.5
(0.9)
A 		9
(-2.4)
P 		8
(-2.6)
A 		14.7
(-1)
A 		6.5
(-3)
A 		25
C 3
(-2.2)
A 		16.8
(3)
P 		4.9
(-1.5)
A 		0.9
(-3)
A 		0.9
(-3)
A 		11.9
(1.2)
A 		16
avr 14
(2.5) 		15
(3) 		7.7
(-0.7) 		3.3
(-3) 		8.6
(-0.3) 		9.5
(0.2) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175532_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.28239
Sequence Type Exemplar sequence
Representative Public ID AV180727 NCBI
Target Description AV180727_rc /REP_DB=TREMBL Accession /GB=AV180727 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk611d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a UniGene identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) AV180727
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
AV180727 AV180727_rc /REP_DB=TREMBL Accession /GB=AV180727 /CHR=5 /FEA=Genomic Cluster /REVCOMP /DEF=Caenorhabditis elegans cDNA clone:yk611d1 : 3prime end, single read. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_071256 9/11 Negative Strand Matching Probes A 
NM_071282 9/11 Negative Strand Matching Probes A 
Y19D10A.4 9/11 Negative Strand Matching Probes A 
C01B4.7 9/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2497558-2498871(-) 100.0 100.0
chrV:2389279-2390592(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175532_AT
aaatctacatataacgtcaggacaaaaaaaagagcaccgctaacacttctcgaatgcctt
tggatcttttcgtttcgtataattagcggcttgttgagtggtcaaccatgggaatggagc
gttggtgataatcatgataagggtgatgatgatgaacaggcgtgaccactgatctggcgt
attatccggacacaaaatgccgactcctaacggcgagatgaactgaacacagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTACATATAACGTCAGGACAA 357 117 16 Antisense
AAAAGAGCACCGCTAACACTTCTCG 667 131 43 Antisense
GAATGCCTTTGGATCTTTTCGTTTC 290 331 67 Antisense
CGTTTCGTATAATTAGCGGCTTGTT 391 245 86 Antisense
GCGGCTTGTTGAGTGGTCAACCATG 498 293 101 Antisense
GGGAATGGAGCGTTGGTGATAATCA 488 493 125 Antisense
GAACAGGCGTGACCACTGATCTGGC 98 351 169 Antisense
CTGATCTGGCGTATTATCCGGACAC 161 239 184 Antisense
ATCCGGACACAAAATGCCGACTCCT 156 39 199 Antisense
AATGCCGACTCCTAACGGCGAGATG 236 167 211 Antisense
AACGGCGAGATGAACTGAACACAGT 564 143 224 Antisense
Sequence Source Affymetrix Proprietary Database